Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01031 and RBAM_006360

See DNA alignment / Visit BSNT_01031 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:42
# Commandline: needle
#    -asequence pep-align/BSNT_01031___ydiB.1.9828.seq
#    -bsequence pep-align/RBAM_006360___ydiB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01031___ydiB-RBAM_006360___ydiB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01031___ydiB-RBAM_006360___ydiB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01031___ydiB
# 2: RBAM_006360___ydiB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 158
# Identity:     130/158 (82.3%)
# Similarity:   145/158 (91.8%)
# Gaps:           0/158 ( 0.0%)
# Score: 710.0
# 
#
#=======================================

BSNT_01031___      1 MKQLKWRTVNPEETKAIAKLAAAFAKPGDVLTLEGDLGAGKTTFTKGFAE     50
                     ||.|:|||.|||||||:|||||:.|||||:||||||||||||||||||||
RBAM_006360__      1 MKTLQWRTKNPEETKAVAKLAASLAKPGDILTLEGDLGAGKTTFTKGFAE     50

BSNT_01031___     51 GLGITRIVNSPTFTIIKEYNDGVLPLYHMDVYRMEDESEDLGLDEYFHGQ    100
                     ||||||:||||||||||||:||.||||||||||||||||||||:|||.||
RBAM_006360__     51 GLGITRVVNSPTFTIIKEYHDGSLPLYHMDVYRMEDESEDLGLEEYFEGQ    100

BSNT_01031___    101 GVCLVEWAHLIEEQLPQERLQIVIKRAGDDEREITFTAVGNRYEMLCEEL    150
                     ||||:||||||::|||.|||||||.||||:.|:|||||.|.|||.||||:
RBAM_006360__    101 GVCLIEWAHLIQDQLPAERLQIVITRAGDEARDITFTACGTRYETLCEEI    150

BSNT_01031___    151 SRHDNISN    158
                     ::|||..|
RBAM_006360__    151 NKHDNTGN    158


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.