Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_01752 and RBAM_006260

See DNA alignment / Visit BSNT_01752 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:27
# Commandline: needle
#    -asequence pep-align/BSNT_01752___yhfP.1.9828.seq
#    -bsequence pep-align/RBAM_006260___yhfP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_01752___yhfP-RBAM_006260___yhfP.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_01752___yhfP-RBAM_006260___yhfP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01752___yhfP
# 2: RBAM_006260___yhfP
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 333
# Identity:     197/333 (59.2%)
# Similarity:   246/333 (73.9%)
# Gaps:           3/333 ( 0.9%)
# Score: 1012.0
# 
#
#=======================================

BSNT_01752___      1 MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLA     50
                     |:..|:||..::..|..||.|:.::.:|||:..|||||.|||:||||.||
RBAM_006260__      1 MTDQFKALVVDQREDRFSVSVRELAVQDLPEGEVLIKVCYSGVNYKDSLA     50

BSNT_01752___     51 GKAGGNIVREYPLILGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDG    100
                     ....|.||..||.:.|||.||.||||:|.||.|||:||||||.:||||.|
RBAM_006260__     51 AIPDGKIVTSYPFVPGIDLAGIVVSSDDARFKEGDKVIATSYGIGVSRFG    100

BSNT_01752___    101 GLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPE    150
                     |.|..|.:|.||:||||:.|:|||||..|||||||||||.|||:|..:||
RBAM_006260__    101 GYSGMARIPADWIVPLPEGLTLKEAMTIGTAGFTAALSVQRLEENHAAPE    150

BSNT_01752___    151 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVI    200
                     ||.|||||||||||..|||:|:..||:|.||||..:.:.|||.|||..||
RBAM_006260__    151 KGKVLVTGATGGVGSFAVSILSTLGYEVEASTGKEDESGYLKSLGAKTVI    200

BSNT_01752___    201 SREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTG    250
                     .|::||:||||.:.||:|..|||||||:.|||:||:|||||||||||||.
RBAM_006260__    201 HRDEVYNGTLKPMQKQKWAAAVDPVGGEPLASVLSQIQYGGSVAVSGLTA    250

BSNT_01752___    251 GGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTI    300
                     |.::||||:|||||||||||||||:|||:.|...|:|::.|.||..|...
RBAM_006260__    251 GTKLPATVFPFILRGVSLLGIDSVFCPMETRKKTWQRLADDFKPADLEAF    300

BSNT_01752___    301 VDREVSLEETPGALKDILQNRIQGRVIVKL---    330
                     :.:|::|||.|..|..:|:...:||.||.:   
RBAM_006260__    301 IQKEITLEELPDTLPALLKGEARGRTIVTINEE    333


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.