Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01752 and RBAM_006260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:27
# Commandline: needle
# -asequence dna-align/BSNT_01752___yhfP.1.9828.seq
# -bsequence dna-align/RBAM_006260___yhfP.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01752___yhfP-RBAM_006260___yhfP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01752___yhfP-RBAM_006260___yhfP.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01752___yhfP
# 2: RBAM_006260___yhfP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1098
# Identity: 664/1098 (60.5%)
# Similarity: 664/1098 (60.5%)
# Gaps: 201/1098 (18.3%)
# Score: 1757.0
#
#
#=======================================
BSNT_01752___ 1 ATGTCAACGTT--ATTTCAAGCATT-GCAGGCAGAAAAA----AATGCCG 43
|||.|| |.| ||||.||||.|| |.||.| ||..|| ||..|||
RBAM_006260__ 1 ATGACA--GATCAATTTAAAGCGTTAGTAGTC-GATCAACGTGAAGACCG 47
BSNT_01752___ 44 ATGATGTTTCAGTCCATGTGAAAACCATA--------------TCAACAG 79
.| |||||||| |.|.|| ||
RBAM_006260__ 48 GT----TTTCAGTC---------AGCGTACGGGAGCTGGCGGTTC----- 79
BSNT_01752___ 80 AGGATTTGCCTAAGGATGGTGTCCTGATTAAAG-TTGCTTATTCCGGCAT 128
||||..|.||..|||.||..||.||||||||.| |||| ||.||.||..|
RBAM_006260__ 80 AGGACCTTCCCGAGGGTGAAGTGCTGATTAAGGTTTGC-TACTCAGGGGT 128
BSNT_01752___ 129 CAATTACAAAGATGGTCTGGCCGGAAAAGCAGGAGGCAATATCGTCAGAG 178
.|||||.|||||..|..||||.|..|...|.|..|||||.|||||.|...
RBAM_006260__ 129 GAATTATAAAGACAGCTTGGCTGCCATTCCTGACGGCAAGATCGTAACGT 178
BSNT_01752___ 179 AGTATCCACTTATTTT------AGGCATTGATGCTGCGGGTACGGTCGTC 222
.|||||| ||| .||.||||||...|||||.|..|||||.
RBAM_006260__ 179 CGTATCC------TTTCGTGCCGGGAATTGATTTAGCGGGAATTGTCGTT 222
BSNT_01752___ 223 TCTTCCAATGATCCGCGTTTTGCGGAGGGGGATGAGGTGATCGCGACAAG 272
||.||..||||..|.|||||....|||||||||.|.||.||.||||||||
RBAM_006260__ 223 TCCTCAGATGACGCCCGTTTCAAAGAGGGGGATAAAGTCATTGCGACAAG 272
BSNT_01752___ 273 CTATGAGC-TCGGTGTCTCCCGTGATGGCGGATTA-AGTGAATACGCTTC 320
|||.| || |.|||||.||||||..|||||| ||| || |
RBAM_006260__ 273 CTACG-GCATAGGTGTTTCCCGTTTTGGCGG-TTATAG-----------C 309
BSNT_01752___ 321 GG-----------TGCCTGGTGACTGGCTGGTGCCTTTGCCACAGAA--T 357
|| |.||.|..||.|||.|.|||||..||| |.||| |
RBAM_006260__ 310 GGGATGGCCCGCATTCCGGCAGATTGGATCGTGCCGCTGC--CTGAAGGT 357
BSNT_01752___ 358 CTTTCGTTAAAAGAAGCGATGGTGTACGGAACGGCGGGATTTACTGCGGC 407
||..|..|.||||||||.|||..|..||||||.||.||.||.|||||.||
RBAM_006260__ 358 CTGACACTTAAAGAAGCCATGACGATCGGAACCGCCGGCTTCACTGCCGC 407
BSNT_01752___ 408 GTTATCAGTGCATCGGCTTGAACAGA---ATGGTCTGTCTCCGGAAAAAG 454
.||.||.||.||.||.||||||.|.| ||| |.| ||||.|||||||
RBAM_006260__ 408 ATTGTCCGTCCAGCGTCTTGAAGAAAACCATG--CCG-CTCCTGAAAAAG 454
BSNT_01752___ 455 GCAGCGTGCTAGTCACAGGAGCAACCGGCGGTGTCGGCGGAATTGCGGTA 504
|.|..|||||.||.||||||||.||.|||||.|||||..|..||||.||.
RBAM_006260__ 455 GGAAGGTGCTGGTGACAGGAGCGACAGGCGGCGTCGGAAGCTTTGCTGTC 504
BSNT_01752___ 505 TCGATGC--TGAAC---AAGCGGGGCTATGATGTGGTGGCAAGCACCGGA 549
||.||.| |.||| | ||.||.||.||.|.|||.||.||.|||
RBAM_006260__ 505 TCCATTCTTTCAACCTTA-----GGTTACGAGGTCGAGGCCAGTACGGGA 549
BSNT_01752___ 550 A------ACCGGGAGGCGGCTGATTATTTGAAACAG-CTCGGTGCAA--G 590
| || |.|.||||| |||||| ||.|| |||||.|||| .
RBAM_006260__ 550 AAAGAAGAC--GAAAGCGGC----TATTTG-AAGAGCCTCGGAGCAAAGA 592
BSNT_01752___ 591 CGAAGT-AATCAGCAGGGAAGATGTCTATGACGGAACGCTTAAGGCGCTG 639
|| || |.||| |.|.||.||.||.|||.||||.|||.|.||..|..||
RBAM_006260__ 593 CG--GTCATTCA-CCGTGACGAAGTGTATAACGGCACGTTAAAACCAATG 639
BSNT_01752___ 640 TCCAAGCAGCAAT-GGCAGGGAGCGGTTGATCCAGTCGGCGGAAAACAGC 688
...||.||..||| |||||.| ||.||.|||||.|||||.||..|.|.||
RBAM_006260__ 640 CAAAAACAAAAATGGGCAGCG-GCCGTCGATCCGGTCGGAGGTGAGCCGC 688
BSNT_01752___ 689 TTGCCTCGCTTTTAAGCAAAATTCAATACGGCGGATCTGTCGCAGTGAGC 738
||||.||..||.|.|||.|.|||||.|||||||||||.||.||.||||||
RBAM_006260__ 689 TTGCTTCAGTTCTCAGCCAGATTCAGTACGGCGGATCAGTTGCTGTGAGC 738
BSNT_01752___ 739 GG-CTTAACCGGCGG--AGGAGAAGTTCCGGCAACGGTGTATCCTTTTAT 785
|| ||.| |.|||| |.|| ||.|.|||||.||.||.|.|||.|||||
RBAM_006260__ 739 GGACTGA--CAGCGGGAACGA-AACTCCCGGCTACAGTCTTTCCGTTTAT 785
BSNT_01752___ 786 TCTTCGCGGAGTAAGCCTGCTCGGAATCGATTCAGTATACTGTCCGATGG 835
..|.|||||.||.||.||..|.|||||||||||.||||.|||||||||||
RBAM_006260__ 786 ATTGCGCGGCGTCAGTCTCTTGGGAATCGATTCCGTATTCTGTCCGATGG 835
BSNT_01752___ 836 ACGTC-----AGA-------GCCGCTGTTTGGGAGCGCATGTCTTCTGAT 873
| |.| ||| ||.|| |||| |||..|||.||
RBAM_006260__ 836 A-GACAAGAAAGAAAACATGGCAGC-GTTT---AGCTGATGACT------ 874
BSNT_01752___ 874 CTCAAGCCTGATCAG--CTGCTGACCATCGTGGACAGGGAAGTATCATTG 921
||||||||| ||| |||..|.||.|..|..|.|.||||.|..||.|.
RBAM_006260__ 875 -TCAAGCCTG--CAGATCTGGAGGCCTTTATTCAAAAGGAAATTACACTT 921
BSNT_01752___ 922 GAAGAAACGCCGGGTGCG------------TTAAAAGATATTTTGCAAAA 959
|||||...|||||.|.|| |||||| |.|.||
RBAM_006260__ 922 GAAGAGCTGCCGGATACGCTTCCTGCTCTTTTAAAA--------GGAGAA 963
BSNT_01752___ 960 TCGCATTCA-AGGAAGAGTGATTGT----------GAAGCTTTAA--- 993
.|| | |||||||..|||.|| |||| ||
RBAM_006260__ 964 GCG-----AGAGGAAGAACGATCGTTACAATAAACGAAG----AATAA 1002
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