Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02934 and RBAM_006250

See DNA alignment / Visit BSNT_02934 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:47
# Commandline: needle
#    -asequence pep-align/BSNT_02934___yndB.1.9828.seq
#    -bsequence pep-align/RBAM_006250___yndB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02934___yndB-RBAM_006250___yndB.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02934___yndB-RBAM_006250___yndB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02934___yndB
# 2: RBAM_006250___yndB
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 156
# Identity:      85/156 (54.5%)
# Similarity:   106/156 (67.9%)
# Gaps:          13/156 ( 8.3%)
# Score: 449.0
# 
#
#=======================================

BSNT_02934___      1 --MAQNNEN--------ALPDITKSITLEAPIQKVWETVSTSEGIAKWFM     40
                       ..|||:|        .||||..:...:||||.||:||||::|::.|||
RBAM_006250__      1 MSDKQNNDNKNNNSSNQPLPDIIHTAVFKAPIQVVWDTVSTADGLSLWFM     50

BSNT_02934___     41 PNDFQLKEGQEFHLQSPFGPSPCKVLAVQAPTELSFEWDTEGWVVTFQLE     90
                     ||||..:|..||.|:|||||||||:|.::||..|||.||||||:|:|.|:
RBAM_006250__     51 PNDFTPQEDSEFQLESPFGPSPCKLLDIEAPYRLSFSWDTEGWIVSFVLK    100

BSNT_02934___     91 DL--GEKTGFTLIHSGWKEPNEVIGKANEKSSVVRGKMDGGWTGIVNERL    138
                     :.  |: |.|||||.|||||..||.|.|.|||.:...||.||.|:||.:|
RBAM_006250__    101 ETESGD-TEFTLIHGGWKEPEAVINKVNRKSSEIHSTMDQGWNGLVNTKL    149

BSNT_02934___    139 RKAVEE    144
                     |.|||.
RBAM_006250__    150 RGAVEA    155


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