Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02934 and RBAM_006250
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:47
# Commandline: needle
# -asequence dna-align/BSNT_02934___yndB.1.9828.seq
# -bsequence dna-align/RBAM_006250___yndB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02934___yndB-RBAM_006250___yndB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02934___yndB-RBAM_006250___yndB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02934___yndB
# 2: RBAM_006250___yndB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 484
# Identity: 311/484 (64.3%)
# Similarity: 311/484 (64.3%)
# Gaps: 65/484 (13.4%)
# Score: 881.5
#
#
#=======================================
BSNT_02934___ 1 ATGGCT------CAAAACAACGAAA------------------------A 20
|||.|| ||||||||.||.| |
RBAM_006250__ 1 ATGTCTGATAAACAAAACAATGATAACAAAAACAACAACAGCAGCAATCA 50
BSNT_02934___ 21 TGCATTACCGGATATTA--CAAAAAGCATTACTCTGGAGGCTCCCATTCA 68
..||||||||||.|||| ||.|..||..| |.|..||||.||.||.||
RBAM_006250__ 51 GCCATTACCGGACATTATTCATACCGCCGT--TTTCAAGGCGCCGATACA 98
BSNT_02934___ 69 GAAAGTCTGGGAGACAGTCTCTACTTCAGAAGGCATTGCCAAGTGGTTTA 118
....||||||||.||.|||||.|||.|.||.|||.|..|....|||||||
RBAM_006250__ 99 AGTTGTCTGGGATACGGTCTCCACTGCGGACGGCCTGTCTCTCTGGTTTA 148
BSNT_02934___ 119 TGCCCAATGACTTT--CAGCTCAAAGAAGGACA-AGAATTTCACTTACAA 165
||||.||||| ||| ||.||| ||||| |||| .||.|||||..|..||
RBAM_006250__ 149 TGCCGAATGA-TTTCACACCTC-AAGAA-GACAGTGAGTTTCAGCTGGAA 195
BSNT_02934___ 166 TCGCCGTTTGGGCCGTCCCCTTGTAAAGTTTTGGCTGTTCAAGCTCC-AA 214
||.|||||.||.|||||.||.||.||..|..|||.|.||.||||.|| .|
RBAM_006250__ 196 TCTCCGTTCGGTCCGTCTCCGTGCAAGCTGCTGGATATTGAAGCGCCGTA 245
BSNT_02934___ 215 CTGAACTTTCTTTTGAATGGGATACAGAAGGATGGGTCGTTACCTTTCAA 264
|.| .|||||||||...||||||||.|||||.|||.|||||.|.|||...
RBAM_006250__ 246 CCG-CCTTTCTTTTTCGTGGGATACGGAAGGCTGGATCGTTTCTTTTGTC 294
BSNT_02934___ 265 TTAGAAG---ACTTGGGGGAAA----AGACAGGG--TTTACCCTTATTCA 305
||| ||| || ||||| |||.|.|| ||.||.||.|||||
RBAM_006250__ 295 TTA-AAGGAAAC-----GGAAAGCGGAGATACGGAATTCACTCTCATTCA 338
BSNT_02934___ 306 CAGCGGCTGGAAAGAGCCGAATGAAGTGATCGGCAAAG-CAAACGAGAAA 354
|.||||.||||||||||||.|.|..||.|||...|||| |||.|| ||||
RBAM_006250__ 339 CGGCGGATGGAAAGAGCCGGAAGCCGTCATCAATAAAGTCAATCG-GAAA 387
BSNT_02934___ 355 AGCTCCGTCGTTCGCGGTAAGATGGATGGCGGCTGG-ACTGGCATTGTAA 403
|||||||...|||.|.|||.|||||||...||.||| ||.||| ||||.|
RBAM_006250__ 388 AGCTCCGAGATTCACAGTACGATGGATCAAGGATGGAACGGGC-TTGTCA 436
BSNT_02934___ 404 ATGAACG--GCTTCGTAAGGCTGTCGAAGAATAA 435
| .||| .|||||...|||.||.||.|..|||
RBAM_006250__ 437 A--CACGAAACTTCGCGGGGCGGTTGAGGCTTAA 468
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