Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05208 and RBAM_006220

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence pep-align/BSNT_05208___yvdT.1.9828.seq
#    -bsequence pep-align/RBAM_006220___yvdT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05208___yvdT-RBAM_006220___yvdT.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05208___yvdT-RBAM_006220___yvdT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05208___yvdT
# 2: RBAM_006220___yvdT
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 194
# Identity:     156/194 (80.4%)
# Similarity:   169/194 (87.1%)
# Gaps:           1/194 ( 0.5%)
# Score: 791.0
# 
#
#=======================================

BSNT_05208___      1 MPKQTSGKYEKILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSS     50
                     |.||:||||||||||||||||||||||||||:||||||||||||||||||
RBAM_006220__      1 MAKQSSGKYEKILQAAIEVISEKGLDKASISEIVKKAGTAQGTFYLYFSS     50

BSNT_05208___     51 KNALIPAIAENLLTHTLDQIKGRLHGDEDFWTVLDILIDETFLITERHKD    100
                     |||||.|||||||..|||:|||:..|.|||||:||||:||||.||..|||
RBAM_006220__     51 KNALISAIAENLLDTTLDRIKGKTDGSEDFWTLLDILVDETFHITRLHKD    100

BSNT_05208___    101 IIVLCYSGLAIDHSMEKWETIYQPYYSWLEQIINKAIANHEVTEGINSKW    150
                     |||||||||||||||||||.||||||||||.:||.||...||..||:.:|
RBAM_006220__    101 IIVLCYSGLAIDHSMEKWEAIYQPYYSWLEGVINTAIEQGEVHSGIHVRW    150

BSNT_05208___    151 TARTIINLVENTAERFYIGFEQDENVEVYKKEIFTFLKRSLGTA    194
                     |||||||:|||.|||||||.|||.::||||||||:||||||.. 
RBAM_006220__    151 TARTIINVVENAAERFYIGCEQDVDLEVYKKEIFSFLKRSLQK-    193


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