Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05208 and RBAM_006220
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:42
# Commandline: needle
# -asequence dna-align/BSNT_05208___yvdT.1.9828.seq
# -bsequence dna-align/RBAM_006220___yvdT.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05208___yvdT-RBAM_006220___yvdT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05208___yvdT-RBAM_006220___yvdT.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05208___yvdT
# 2: RBAM_006220___yvdT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 611
# Identity: 449/611 (73.5%)
# Similarity: 449/611 (73.5%)
# Gaps: 55/611 ( 9.0%)
# Score: 1630.0
#
#
#=======================================
BSNT_05208___ 1 ATGCCAAAACAAACATCGGGCAAATATGAAAAAATTCTGCAGGCTGCCAT 50
.||.|||||||||..|||||.|||||.|||||.||.|||||.||.||.||
RBAM_006220__ 1 TTGGCAAAACAAAGCTCGGGAAAATACGAAAAGATCCTGCAAGCCGCGAT 50
BSNT_05208___ 51 AGAAGTGATTTCTGAAAAAGGCCTCGACAAAGCTTCTATTTCTGATATTG 100
.|||||.||||||||||||||..|.||||||||.||.|||||.||.||.|
RBAM_006220__ 51 TGAAGTCATTTCTGAAAAAGGATTAGACAAAGCATCCATTTCAGAAATCG 100
BSNT_05208___ 101 TCAAAAAGGCCGGCACTGCCCAAGGAACATTCTATTTGTATTTTTCATCT 150
|||||||.|||||.||.||||||||.||.||.||.||.||||||||.|||
RBAM_006220__ 101 TCAAAAAAGCCGGAACGGCCCAAGGTACGTTTTACTTATATTTTTCTTCT 150
BSNT_05208___ 151 AAAAATGCCCTCATACCGGCCATTGCAGAAAATCTTCTC-ACCCATACAC 199
|||||.||.||.|||.|.||.|||||||||||.||.||| ||.| |||.|
RBAM_006220__ 151 AAAAACGCACTGATATCCGCGATTGCAGAAAACCTGCTCGACAC-TACGC 199
BSNT_05208___ 200 TTGATCA-AATCAAAGGTAGGCTGCATGGGGAC------GAAGATTTTTG 242
|.|| || |||.||||| |.|...|||| |||||||||||
RBAM_006220__ 200 TGGA-CAGAATAAAAGG------GAAAACGGACGGTTCTGAAGATTTTTG 242
BSNT_05208___ 243 GACCGTT-TTAGATATATTAATTGATGAGACATTTCTCATTACAGAAC-- 289
|| |||| .|.||.||.||..|.|||||||||||||.|||.|| |
RBAM_006220__ 243 GA-CGTTGCTGGACATTTTGGTAGATGAGACATTTCACATCAC----CCG 287
BSNT_05208___ 290 GC--CATAAGGATATTATTGTCCTCTGTTATTCCGGGCTTGCGATCGACC 337
|| |||||.||||||||.||.||||||||||||||.|||||.|||||.|
RBAM_006220__ 288 GCTTCATAAAGATATTATCGTTCTCTGTTATTCCGGTCTTGCCATCGATC 337
BSNT_05208___ 338 ACTCCATGGAAAAATGGGAGACGATCTATCAGCCTTATTATTCCTGGCTT 387
|.||.|||||.||||||||..|.||.|||||||||||||||||||||||.
RBAM_006220__ 338 ATTCAATGGAGAAATGGGAAGCCATTTATCAGCCTTATTATTCCTGGCTG 387
BSNT_05208___ 388 GAACAAATCATCAACAAGGCCATTGCAAACCATGAGGT----AACGGAAG 433
|||....|.|||||.|.||||||||.|.|...|||||| |.|||
RBAM_006220__ 388 GAAGGCGTGATCAATACGGCCATTGAACAGGGTGAGGTCCACAGCGG--- 434
BSNT_05208___ 434 GCATCAATTCA----AAATGGACGGCCAGAACGATTATCAACTTGGTCGA 479
.||||| |.|||||||||||||||||||||||||.|.|||||
RBAM_006220__ 435 -----CATTCATGTCAGATGGACGGCCAGAACGATTATCAACGTTGTCGA 479
BSNT_05208___ 480 GAATACTGCGGAACGATTCTATATCGGATTTGAACAAGATGAAAATGTTG 529
|||..|.||.|||||.||.||||||||.|.||||||.||||...||.|.|
RBAM_006220__ 480 GAACGCGGCTGAACGGTTTTATATCGGCTGTGAACAGGATGTCGATCTCG 529
BSNT_05208___ 530 AAGTGTATAAAAAGGAAATTTTCA-CTTTCTTAAAACGGAGCTTAGGCAC 578
||||.||||||||.|||||.|||| ||||||.|||| |.||||
RBAM_006220__ 530 AAGTATATAAAAAAGAAATATTCAGCTTTCTCAAAA-GAAGCT------- 571
BSNT_05208___ 579 TGCTTAA---- 585
|||..||
RBAM_006220__ 572 TGCAGAAATGA 582
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