Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_05211 and RBAM_006200

See DNA alignment / Visit BSNT_05211 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence pep-align/BSNT_05211___yvdR.1.9828.seq
#    -bsequence pep-align/RBAM_006200___yvdR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_05211___yvdR-RBAM_006200___yvdR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05211___yvdR-RBAM_006200___yvdR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05211___yvdR
# 2: RBAM_006200___yvdR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 106
# Identity:      75/106 (70.8%)
# Similarity:    90/106 (84.9%)
# Gaps:           2/106 ( 1.9%)
# Score: 401.0
# 
#
#=======================================

BSNT_05211___      1 MAWFLLVIAGIEEIIAAIAMKYIDGTRKKWPIIVMTLGFGLSFYCLSQAM     50
                     |||.||.|||.||::||:|||:|||.:||||:|||..||.|||:|||.||
RBAM_006200__      1 MAWLLLFIAGAEEVVAAVAMKHIDGFKKKWPLIVMVTGFMLSFFCLSGAM     50

BSNT_05211___     51 IVLPAGVAYAVWTGIGSIGVSAVGLIWFKERFQLSQVISLCLILAGVIGL    100
                     .|||.|||||.|||:|||||||||::||||:|.|||::||.|||.|||||
RBAM_006200__     51 QVLPTGVAYAAWTGMGSIGVSAVGILWFKEKFNLSQLVSLGLILIGVIGL    100

BSNT_05211___    101 RLTSSS    106
                     :||:  
RBAM_006200__    101 KLTA--    104


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