Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05211 and RBAM_006200

See Amino acid alignment / Visit BSNT_05211 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:42
# Commandline: needle
#    -asequence dna-align/BSNT_05211___yvdR.1.9828.seq
#    -bsequence dna-align/RBAM_006200___yvdR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05211___yvdR-RBAM_006200___yvdR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05211___yvdR-RBAM_006200___yvdR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05211___yvdR
# 2: RBAM_006200___yvdR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 339
# Identity:     221/339 (65.2%)
# Similarity:   221/339 (65.2%)
# Gaps:          42/339 (12.4%)
# Score: 708.5
# 
#
#=======================================

BSNT_05211___      1 ATGGCATGGTTTTTATTAGTGATTGCCGGCATTGAAGAAATTATAGCTGC     50
                     |||||||||.|..|.|||.|.||||||||....||.|||.||.||||.||
RBAM_006200__      1 ATGGCATGGCTGCTGTTATTTATTGCCGGAGCGGAGGAAGTTGTAGCGGC     50

BSNT_05211___     51 CATTGCCATGAAATATATTGATGGGACAAGAAAAAAATGGCCGATCATTG    100
                     |.|||||||||||.|||||||.||....|.||||||.||||||.|.||||
RBAM_006200__     51 CGTTGCCATGAAACATATTGACGGTTTTAAAAAAAAGTGGCCGCTGATTG    100

BSNT_05211___    101 TGATG-----ACGCTTGGATTCGGCTT--ATCCTTTTACTGCCTGTCCCA    143
                     |.|||     |.|||    ||..||||  ||.||||   ||.||.|||..
RBAM_006200__    101 TCATGGTAACAGGCT----TTATGCTTTCATTCTTT---TGTCTTTCCGG    143

BSNT_05211___    144 AGCGATGATCGTCCTGCCTGCCGGAGTCGCTTATGCCGTCTGGACCGGCA    193
                     |||||||...||.||.||..|.||.|||||.|||||.|..||||||||||
RBAM_006200__    144 AGCGATGCAGGTTCTTCCCACAGGTGTCGCGTATGCGGCTTGGACCGGCA    193

BSNT_05211___    194 TTGGCAGCATTGGCGTTTCGGCGGTCGGGC-TCATCTGGTTTAAGGAGCG    242
                     |.||.|||||.|||||||||||.|| |||| |..|.||||||||.||...
RBAM_006200__    194 TGGGAAGCATCGGCGTTTCGGCCGT-GGGCATACTTTGGTTTAAAGAAAA    242

BSNT_05211___    243 GTTTCAGCTTTCACAGGTGATTTCACTTTGCCTTATCCTAGCCGGCGTCA    292
                     .||..|.||.|||||..||.|.||.||..|.||||||||...|||.||||
RBAM_006200__    243 ATTCAATCTGTCACAATTGGTGTCTCTGGGGCTTATCCTCATCGGTGTCA    292

BSNT_05211___    293 TCGGCCTGCGTCTTA----------CGTCATCTTCATAA    321
                     ||||       ||||          |||.|         
RBAM_006200__    293 TCGG-------CTTAAAACTGACAGCGTGA---------    315


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