Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_05201 and RBAM_006140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:41
# Commandline: needle
# -asequence pep-align/BSNT_05201.1.9828.seq
# -bsequence pep-align/RBAM_006140___pbpE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_05201-RBAM_006140___pbpE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_05201-RBAM_006140___pbpE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05201
# 2: RBAM_006140___pbpE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 453
# Identity: 193/453 (42.6%)
# Similarity: 240/453 (53.0%)
# Gaps: 137/453 (30.2%)
# Score: 1021.5
#
#
#=======================================
BSNT_05201 0 -------------------------------------------------- 0
RBAM_006140__ 1 MNEKKKQAFEQLFSTLDERHEINGAVLAAENGRILYQGSFGAAELKTKRM 50
BSNT_05201 0 -------------------------------------------------- 0
RBAM_006140__ 51 LNDQSVFELASVSKPFTALGVIILEQQGKLRYDDMIERWLPDFPYPGITI 100
BSNT_05201 1 ----------------------------------MLMNEGLSGYFEPNEG 16
||.......||.|.:.
RBAM_006140__ 101 RHLLHHTSGLPDYMELFLTHWDRDRIAVNQDVINMLKQHKPDAYFPPGKE 150
BSNT_05201 17 WMYSNTGYVLLAVIIEKASGMSYADFMKTSIFSPAGMNETRVYNRRLSPE 66
|:|||||||:||||||..||||:|:|||.::|.|..|::||:||||||.|
RBAM_006140__ 151 WLYSNTGYVVLAVIIEIVSGMSFAEFMKQAVFHPLRMHDTRIYNRRLSKE 200
BSNT_05201 67 RIDHYAYGYVYDVHSETYVLPDELEETNYVVYLDGIQGDGTVNSVTSDLF 116
.|.:|||||||||||..||||||||||:|||:||||||||||||...||:
RBAM_006140__ 201 NIPNYAYGYVYDVHSGEYVLPDELEETDYVVFLDGIQGDGTVNSAIRDLY 250
BSNT_05201 117 RFDQALYQDDFISKASKESAFSPVRLNNGETIDYGFGWVLQNSPEKGRVV 166
.||||||.::.|.|.||:.||:|...|..:...|||||::||||.||:|:
RBAM_006140__ 251 LFDQALYTEEIIGKESKDQAFTPGYWNEEKQFGYGFGWMIQNSPLKGKVI 300
BSNT_05201 167 SHSGGWPGYSTMMIRYIDHRKTLIYLSNKEEDTEYEQAILKAAEHILFGQ 216
||.||||||||:||||||..||||||||.|:..::|||::.||.:|||.|
RBAM_006140__ 301 SHDGGWPGYSTLMIRYIDQNKTLIYLSNMEQSYQFEQAVIAAAVNILFDQ 350
BSNT_05201 217 PYEVPERPADKKKKAIDTAIYSRYVGSYLLQDGTAAQVTAENERLYLEIA 266
||.:|:||||:||..||.|||||:.|:|..||.|.|.|..:.:||||.|.
RBAM_006140__ 351 PYVIPKRPADQKKADIDPAIYSRFTGNYSFQDDTHASVAVKEDRLYLTID 400
BSNT_05201 267 GRLRLELFPSSETRFFLRALSVEVEFTLG--VDAAKSFILYEDGSEEEAV 314
|:...||||.:|||:|:|||.:|:|| :| ...|..|:||:||:||.||
RBAM_006140__ 401 GQTPFELFPMTETRYFVRALPLEIEF-VGDKAQTAPHFVLYQDGTEETAV 449
BSNT_05201 315 RTK 317
|..
RBAM_006140__ 450 RID 452
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