Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05201 and RBAM_006140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:41
# Commandline: needle
# -asequence dna-align/BSNT_05201.1.9828.seq
# -bsequence dna-align/RBAM_006140___pbpE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05201-RBAM_006140___pbpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05201-RBAM_006140___pbpE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05201
# 2: RBAM_006140___pbpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1409
# Identity: 670/1409 (47.6%)
# Similarity: 670/1409 (47.6%)
# Gaps: 505/1409 (35.8%)
# Score: 1970.5
#
#
#=======================================
BSNT_05201 0 -------------------------------------------------- 0
RBAM_006140__ 1 ATGAACGAAAAGAAAAAACAAGCGTTTGAACAGCTTTTCAGCACTTTAGA 50
BSNT_05201 0 -------------------------------------------------- 0
RBAM_006140__ 51 CGAAAGACATGAAATAAACGGCGCTGTATTGGCAGCGGAAAACGGCCGCA 100
BSNT_05201 0 -------------------------------------------------- 0
RBAM_006140__ 101 TCTTATACCAGGGTTCATTCGGCGCTGCAGAACTGAAAACAAAGAGGATG 150
BSNT_05201 0 -------------------------------------------------- 0
RBAM_006140__ 151 CTGAATGACCAATCGGTCTTTGAATTGGCCTCAGTATCGAAGCCGTTTAC 200
BSNT_05201 0 -------------------------------------------------- 0
RBAM_006140__ 201 AGCTTTAGGCGTTATCATTTTAGAGCAGCAAGGGAAGCTGCGTTATGACG 250
BSNT_05201 0 -------------------------------------------------- 0
RBAM_006140__ 251 ATATGATAGAGCGGTGGCTTCCTGATTTTCCTTATCCGGGCATTACCATT 300
BSNT_05201 1 ----------------ATGC-TGATGAATGAGGGGCTATCTG--GTTATT 31
||.| |.|.||.||..||.||||.|| |||.||
RBAM_006140__ 301 CGGCATTTACTCCATCATACGTCAGGATTGCCGGACTATATGGAGTTGTT 350
BSNT_05201 32 TTGAA------------------------CCG--AATGAAG--------- 46
.|.|| ||| |||.|||
RBAM_006140__ 351 CTTAACACATTGGGACCGGGACAGAATTGCCGTTAATCAAGATGTGATCA 400
BSNT_05201 47 -------------------GCTGGATG----------------------- 54
||.|||||
RBAM_006140__ 401 ATATGCTCAAGCAGCATAAGCCGGATGCTTATTTCCCGCCGGGCAAGGAG 450
BSNT_05201 55 ------TACAGCAATACGGGGTATGTGCTGCTGGCGGTTATCATTGAAAA 98
|||||.|||||||||||||||.||.|.||||||||.||.||||.
RBAM_006140__ 451 TGGCTTTACAGTAATACGGGGTATGTGGTGTTAGCGGTTATTATAGAAAT 500
BSNT_05201 99 AGCATCTGGCATGAGCTATGCGGATTTTATGAAAACAAGTATTTTTTCA- 147
.|.|||.||||||||.|.|||.||.|||||| |||||||...|.|||||
RBAM_006140__ 501 TGTATCAGGCATGAGTTTTGCTGAATTTATG-AAACAAGCCGTATTTCAT 549
BSNT_05201 148 CCGGCAGGCATGAATGAAACAAGAGTGTATAACAGGAGGCTTTCGCCTGA 197
|||....|.|||.|.||.||..|..|.||||||||.||| ||||
RBAM_006140__ 550 CCGCTTCGTATGCACGATACGCGGATTTATAACAGAAGG-------CTGA 592
BSNT_05201 198 GCGAATTGATCAT-------TATGCATATGGATATGTGTATGATGTACAT 240
|..||...|.||| |||||||||||.||||||||||||||.|||
RBAM_006140__ 593 GTAAAGAAAACATTCCGAACTATGCATATGGCTATGTGTATGATGTTCAT 642
BSNT_05201 241 TCCGAAACATACGTCCTTCCTGATGAGCTGGAGGAAACGAACTATGTTGT 290
||||.|..|||.||.||.||.|||||.||.||||||||..|.|||||.||
RBAM_006140__ 643 TCCGGAGAATATGTGCTGCCGGATGAACTTGAGGAAACTGATTATGTCGT 692
BSNT_05201 291 GTATCTCGATGGCATACAGGGAGATGGGACGGTGAACTCTGTCACAAGCG 340
.|.|||.||.||.||.||.||.||.||.||.||.|||||.|..|..||.|
RBAM_006140__ 693 CTTTCTTGACGGAATTCAAGGTGACGGAACCGTTAACTCCGCTATTAGAG 742
BSNT_05201 341 ATTTGTTTCGATTTGATCAGGCTTTATATCAGGACGATTTCATCAGCAAG 390
||||.|.||..||||||||||||.|.|||..|||.||..|||||.||||.
RBAM_006140__ 743 ATTTATATCTGTTTGATCAGGCTCTTTATACGGAAGAAATCATCGGCAAA 792
BSNT_05201 391 GCTTCTAAGGAATC-TGCGTTTTCTCC-----AGTGCGTCTCAACAATGG 434
|..|||||.| ||| .||||||.|.|| |.|| .||||.
RBAM_006140__ 793 GAGTCTAAAG-ATCAAGCGTTTACACCGGGCTATTG--------GAATGA 833
BSNT_05201 435 AGAAA--CAATT--GATTATGGCTTTGGCTGGGTACTGCAAAACAGTCCT 480
||||| ||||| || ||.||.|||||||||.|..|.||||||||.||.
RBAM_006140__ 834 AGAAAAGCAATTCGGA-TACGGATTTGGCTGGATGATTCAAAACAGCCCC 882
BSNT_05201 481 GAAAAAGGGCGGGTTGTCAGCCACAGCGGAGGATGGCCCGGCTATTCGAC 530
..|||||||..||||.||||.|||..||||||.|||||.||||||||.||
RBAM_006140__ 883 CTAAAAGGGAAGGTTATCAGTCACGACGGAGGCTGGCCGGGCTATTCAAC 932
BSNT_05201 531 GATGATGATCCGATATATCGATCATCGTAAAACGCTGATCTATTTGAGTA 580
..||||||||||.|||||.||.||...||||||..||||.|||.|.||.|
RBAM_006140__ 933 TCTGATGATCCGGTATATTGACCAGAATAAAACATTGATTTATCTCAGCA 982
BSNT_05201 581 ATAAGGAAGA---GGATACTGAATATGAACAAGCGATTCTGAAGGCGGCG 627
|||.||||.| |.| |.|||.||||||||| |.|.|..||.|||
RBAM_006140__ 983 ATATGGAACAATCGTA---TCAATTTGAACAAGC---TGTAATTGCCGCG 1026
BSNT_05201 628 G-----AACATATTCTATTTGGCCAGCCATATGAGGTCCCGGAACGTCCT 672
| |||||.| ||||||..||||||||.|.|.|.|||.|||||||.
RBAM_006140__ 1027 GCTGTAAACATCT--TATTTGATCAGCCATACGTGATTCCGAAACGTCCG 1074
BSNT_05201 673 GCTGATAAAAAGAAAAAAGCA---ATTGATACGGCGATATACAGCCGCTA 719
||.||| .||||||||||| ||.|||.|.|||||.||||||.|.|.
RBAM_006140__ 1075 GCAGAT---CAGAAAAAAGCAGATATCGATCCTGCGATTTACAGCAGATT 1121
BSNT_05201 720 TGTTGGCAGCTACCTGTTGCAGGATGGGACGGCTGCACAGGTGACTG-CC 768
|...||||..|||...||.|||||||..||...||||..||||.||| ..
RBAM_006140__ 1122 TACCGGCAATTACTCATTTCAGGATGACACACATGCATCGGTGGCTGTAA 1171
BSNT_05201 769 GAGAATGAACGGCTTTAT-TTGGAGATCGCCGGACGGCTGAGAC-----T 812
.|||| ||.||..|.||| ||..| ||.|.|||.| |||| |
RBAM_006140__ 1172 AAGAA-GACCGATTGTATCTTACA-ATAGACGGGC-----AGACTCCATT 1214
BSNT_05201 813 GGAGTTGTTTCCTTCTTCGGAAACCCGTTTCTTTCTGCGAGCATTGTCTG 862
.||.||.||.||.....||||||||||||..|||.|..|.||..||.|..
RBAM_006140__ 1215 CGAATTATTCCCAATGACGGAAACCCGTTATTTTGTCAGGGCGCTGCCGC 1264
BSNT_05201 863 TTGAAGTCGAGTTTACGTTAGGTGTGGATGCTGCGAAAAGC--------- 903
|||||.|.||.||| .||||||...|.|| .|.||.|||
RBAM_006140__ 1265 TTGAAATTGAATTT---GTAGGTGATAAAGC-ACAAACAGCCCCGCATTT 1310
BSNT_05201 904 ---TTTATCCTCTATGAGGATGGCTCAGAGGAAGAAGCGGTCCGTACGAA 950
|||| |||.||||.|||.|| ||||||.||| |.||.||.|
RBAM_006140__ 1311 CGTTTTA-----TATCAGGACGGCACA---GAAGAAACGG-CTGTGCGGA 1351
BSNT_05201 951 GTAG----- 954
|||
RBAM_006140__ 1352 -TAGACTGA 1359
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