Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00701 and RBAM_006090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence pep-align/BSNT_00701___ycsA.1.9828.seq
# -bsequence pep-align/RBAM_006090___ycsA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00701___ycsA-RBAM_006090___ycsA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00701___ycsA-RBAM_006090___ycsA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00701___ycsA
# 2: RBAM_006090___ycsA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 352
# Identity: 199/352 (56.5%)
# Similarity: 241/352 (68.5%)
# Gaps: 70/352 (19.9%)
# Score: 1065.0
#
#
#=======================================
BSNT_00701___ 1 MKQFEIAAIPGYGVGKEVVAAAEKVLHTAAEVHGGLSFSFTAFPWSCDYY 50
RBAM_006090__ 0 -------------------------------------------------- 0
BSNT_00701___ 51 LEHGKMMPEDGIHTLTQFEAVFLGAVGNPKLVPDHISLWGLLLKIRRELE 100
:||||.||.||||||:||.|||:|||||.|
RBAM_006090__ 1 --------------------MFLGAAGNQKLVPDHVSLRGLLIKIRREFE 30
BSNT_00701___ 101 LSINMRPAKQMAGITSPLLHPNDFDFVVIRENSEGEYSEVGGRIHRGDDE 150
..||:||||.:.||||||::|.|||.:|:|||||||||.|||||::|:||
RBAM_006090__ 31 QVINVRPAKLLPGITSPLVNPKDFDLIVVRENSEGEYSSVGGRIYQGEDE 80
BSNT_00701___ 151 IAIQNAVFTRKATERVMRFAFELAKKRRSHVTSATKSNGIYHAMPFWDEV 200
||||||||:|:.||||||:|||||..||.|||||||||||.|:|||||::
RBAM_006090__ 81 IAIQNAVFSRRGTERVMRYAFELAASRRKHVTSATKSNGIVHSMPFWDDI 130
BSNT_00701___ 201 FQQTAADYSGIETSSQHIDALAAFFVTRPETFDVIVASNLFGDILTDISS 250
|::.:.:|:||||.||||||||||:||:||.||||||||||||:||||.:
RBAM_006090__ 131 FKEVSREYAGIETDSQHIDALAAFYVTQPERFDVIVASNLFGDVLTDIGA 180
BSNT_00701___ 251 SLMGSIGIAPSANINPSGKYPSMFEPVHGSAPDIAGQGLANPIGQIWTAK 300
::||||||||:||||.:|||||||||||||||||.|:|:|||||||||||
RBAM_006090__ 181 AIMGSIGIAPAANINVNGKYPSMFEPVHGSAPDIVGKGIANPIGQIWTAK 230
BSNT_00701___ 301 LMLDHFGEEELGAKILDVMEQVTADGIKTRDIGGQSTTAEVTDEICSRLR 350
||||.|.|||||..:|..:|.||..||.|.|:||:.:|.:||..|.|:::
RBAM_006090__ 231 LMLDSFREEELGHLLLQSIEMVTNSGILTPDVGGKHSTEDVTSAIISQIK 280
BSNT_00701___ 351 KL 352
..
RBAM_006090__ 281 NR 282
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