Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00701 and RBAM_006090

See Amino acid alignment / Visit BSNT_00701 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_00701___ycsA.1.9828.seq
#    -bsequence dna-align/RBAM_006090___ycsA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00701___ycsA-RBAM_006090___ycsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00701___ycsA-RBAM_006090___ycsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00701___ycsA
# 2: RBAM_006090___ycsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity:     589/1116 (52.8%)
# Similarity:   589/1116 (52.8%)
# Gaps:         324/1116 (29.0%)
# Score: 1798.0
# 
#
#=======================================

BSNT_00701___      1 ATGAAACAATTCGAGATTGCGGCAATACCGGGATACGGTGTAGGAAAAGA     50
                                                                       
RBAM_006090__      0 --------------------------------------------------      0

BSNT_00701___     51 GGTTGTAGCGGCTGCTGAGAAAGTGCTTCATACAGCCGCTGAGGTACACG    100
                                                                       
RBAM_006090__      0 --------------------------------------------------      0

BSNT_00701___    101 GAGGTTTGTCATTCTCATTCACGGCTTTTCCATGGAGCTGTGATTATTAC    150
                                                                       
RBAM_006090__      0 --------------------------------------------------      0

BSNT_00701___    151 TTGGAGCACGGCAAAATGATGCCCGAAGATGGAATACATACGCTTACTCA    200
                                                                       
RBAM_006090__      0 --------------------------------------------------      0

BSNT_00701___    201 ATTTGAAGCGGTTTTTTTGGGAGCCGTCGGAAATCCGAAGCTGGTTCCCG    250
                       |||        |||||||||||.|..||.||||..||.||.||.||||
RBAM_006090__      1 --TTG--------TTTTTGGGAGCGGCGGGGAATCAAAAACTCGTCCCCG     40

BSNT_00701___    251 ATCATATATCGTTATGGGGACTGCTGCTGAAAATCCGGAGGGAGCTTGAG    300
                     |||||.|.|||.|..||||.|||||..|.||.||.||..||||..||||.
RBAM_006090__     41 ATCATGTTTCGCTGAGGGGGCTGCTCATCAAGATACGCCGGGAATTTGAA     90

BSNT_00701___    301 CTTTCCATTAATATGAGACCCGCCAAACAAATGGCAGGCATTACGTCGCC    350
                     |.....||||||.||.|.||.||.||.|...||.|.||.||.||.||.||
RBAM_006090__     91 CAGGTGATTAATGTGCGGCCGGCGAAGCTCCTGCCGGGAATCACTTCCCC    140

BSNT_00701___    351 GCTTCTGCATCCAAATGATTTTGACTTCGTGGTGATTCGCGAGAACAGTG    400
                     .||..|..|.||.||.||||||||..|..|.||..|.|||||.|||||||
RBAM_006090__    141 CCTCGTTAACCCGAAAGATTTTGATCTGATAGTCGTCCGCGAAAACAGTG    190

BSNT_00701___    401 AAGGTGAATACAGTGAAGTCGGCGGGCGCAT-TCACAGAGGCGATGATGA    449
                     |.||.||.|||||....||||||||..|.|| |..||| ||.||.||.||
RBAM_006090__    191 AGGGCGAGTACAGCTCTGTCGGCGGCAGAATCTATCAG-GGTGAGGACGA    239

BSNT_00701___    450 AATCGCCATCCAGAATGCCGTGTTTACGAGAAAAGCG----ACAGAACGT    495
                     |||||||||.||.||.||.||.|||.|..||    ||    ||.|||.|.
RBAM_006090__    240 AATCGCCATACAAAACGCGGTCTTTTCCCGA----CGGGGTACGGAAAGA    285

BSNT_00701___    496 GTCATGCGCTTTGCCTTCGAATTGGCGAAAAAACGGCGCAGCCATGTGAC    545
                     ||.|||||.|.|||.||||||.|||||..||..|||||.|..||.||.||
RBAM_006090__    286 GTGATGCGGTATGCTTTCGAACTGGCGGCAAGTCGGCGGAAACACGTCAC    335

BSNT_00701___    546 AAGCGCCACAAAGTCTAACGGCATTTATCATGCGATGCCGTTTTGGGATG    595
                     ||||||.||.||.||.|||||.|||..|||..||||||||||.|||||||
RBAM_006090__    336 AAGCGCGACGAAATCAAACGGTATTGTTCACTCGATGCCGTTCTGGGATG    385

BSNT_00701___    596 AAGTCTTTCAGCAGA---CAGCCGCTGATTATAGCGGAATCGAAAC--AT    640
                     |..|||||.|  |||   |||||| .||.||...|||.||.||.||  ||
RBAM_006090__    386 ACATCTTTAA--AGAGGTCAGCCG-GGAGTACGCCGGGATTGAGACGGAT    432

BSNT_00701___    641 CATCTCAGCATATTGATGCGCTGGCCGCTTTTTTTGTGACGCGTCCGGAA    690
                       ||.|||||.||.|||||.|||||.||.||.|.|||.||||..|||| |
RBAM_006090__    433 --TCCCAGCACATCGATGCACTGGCGGCCTTCTATGTCACGCAGCCGG-A    479

BSNT_00701___    691 ACG-TTTGATGTCATTGTGGCGAGCAACTTGTTCGGTGATATTTTAACCG    739
                     ||| ||||||||||||||.||....||..|||||||.|||.|..|.||.|
RBAM_006090__    480 ACGCTTTGATGTCATTGTCGCTTCGAATCTGTTCGGAGATGTGCTGACAG    529

BSNT_00701___    740 ACATCAGCTCAAGCC--TGATGGGAAGCATCGGCATTGCGCCTTCTGCGA    787
                     |.|||.||.|  |.|  |.||||||||||||||.||.||.||..|.||.|
RBAM_006090__    530 ATATCGGCGC--GGCGATTATGGGAAGCATCGGAATCGCTCCCGCAGCCA    577

BSNT_00701___    788 ACATCAATCCATCCGGCAAATATCCGTCCATGTTTGAACCGGTTCACGGC    837
                     ||||||||..|..||||||||||||.|||||||||||.||.|||||||||
RBAM_006090__    578 ACATCAATGTAAACGGCAAATATCCTTCCATGTTTGAGCCTGTTCACGGC    627

BSNT_00701___    838 TCAGCTCCTGACATTGCCGGACAGGGCCTTGCCAATCCGATTGGCCAGAT    887
                     ||.||.||.||.||||.|||..|.||..||||||||||.||.|||||.||
RBAM_006090__    628 TCCGCCCCGGATATTGTCGGGAAAGGAATTGCCAATCCTATAGGCCAAAT    677

BSNT_00701___    888 TTGGACAGCGAAGCTGATGCTCGA-CCACTTCGGAGAGGAAGAGCTGGGG    936
                     .|||||.|||||..|.|||||||| .|| |||.||||.||.||.||  ||
RBAM_006090__    678 ATGGACGGCGAAATTAATGCTCGATTCA-TTCCGAGAAGAGGAACT--GG    724

BSNT_00701___    937 GCGA---------AAATTCTGGA-TGTAATGGAGCAAGTGACTGCCGACG    976
                     ||.|         |.|.|||  | ||.|||||                  
RBAM_006090__    725 GCCATCTCCTCTTACAATCT--ATTGAAATGG------------------    754

BSNT_00701___    977 GCATCA-AAACACGCGACATT---------------GGGGGACAAAGCA-   1009
                        ||| ||||| |||.||||               ||.||  |||.|| 
RBAM_006090__    755 ---TCACAAACA-GCGGCATTCTGACTCCTGATGTCGGCGG--AAAACAT    798

BSNT_00701___   1010 -CAACGGCTGAGGTCACTGATGAAATCTGTTCGCGCTT------------   1046
                      ||||||..||.||||||           |.|||..||            
RBAM_006090__    799 TCAACGGAAGATGTCACT-----------TCCGCTATTATTTCTCAAATC    837

BSNT_00701___   1047 AAGAAAGCTCTGA---   1059
                     |||||    |.||   
RBAM_006090__    838 AAGAA----CAGATAA    849


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