Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00701 and RBAM_006090
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00701___ycsA.1.9828.seq
# -bsequence dna-align/RBAM_006090___ycsA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00701___ycsA-RBAM_006090___ycsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00701___ycsA-RBAM_006090___ycsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00701___ycsA
# 2: RBAM_006090___ycsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1116
# Identity: 589/1116 (52.8%)
# Similarity: 589/1116 (52.8%)
# Gaps: 324/1116 (29.0%)
# Score: 1798.0
#
#
#=======================================
BSNT_00701___ 1 ATGAAACAATTCGAGATTGCGGCAATACCGGGATACGGTGTAGGAAAAGA 50
RBAM_006090__ 0 -------------------------------------------------- 0
BSNT_00701___ 51 GGTTGTAGCGGCTGCTGAGAAAGTGCTTCATACAGCCGCTGAGGTACACG 100
RBAM_006090__ 0 -------------------------------------------------- 0
BSNT_00701___ 101 GAGGTTTGTCATTCTCATTCACGGCTTTTCCATGGAGCTGTGATTATTAC 150
RBAM_006090__ 0 -------------------------------------------------- 0
BSNT_00701___ 151 TTGGAGCACGGCAAAATGATGCCCGAAGATGGAATACATACGCTTACTCA 200
RBAM_006090__ 0 -------------------------------------------------- 0
BSNT_00701___ 201 ATTTGAAGCGGTTTTTTTGGGAGCCGTCGGAAATCCGAAGCTGGTTCCCG 250
||| |||||||||||.|..||.||||..||.||.||.||||
RBAM_006090__ 1 --TTG--------TTTTTGGGAGCGGCGGGGAATCAAAAACTCGTCCCCG 40
BSNT_00701___ 251 ATCATATATCGTTATGGGGACTGCTGCTGAAAATCCGGAGGGAGCTTGAG 300
|||||.|.|||.|..||||.|||||..|.||.||.||..||||..||||.
RBAM_006090__ 41 ATCATGTTTCGCTGAGGGGGCTGCTCATCAAGATACGCCGGGAATTTGAA 90
BSNT_00701___ 301 CTTTCCATTAATATGAGACCCGCCAAACAAATGGCAGGCATTACGTCGCC 350
|.....||||||.||.|.||.||.||.|...||.|.||.||.||.||.||
RBAM_006090__ 91 CAGGTGATTAATGTGCGGCCGGCGAAGCTCCTGCCGGGAATCACTTCCCC 140
BSNT_00701___ 351 GCTTCTGCATCCAAATGATTTTGACTTCGTGGTGATTCGCGAGAACAGTG 400
.||..|..|.||.||.||||||||..|..|.||..|.|||||.|||||||
RBAM_006090__ 141 CCTCGTTAACCCGAAAGATTTTGATCTGATAGTCGTCCGCGAAAACAGTG 190
BSNT_00701___ 401 AAGGTGAATACAGTGAAGTCGGCGGGCGCAT-TCACAGAGGCGATGATGA 449
|.||.||.|||||....||||||||..|.|| |..||| ||.||.||.||
RBAM_006090__ 191 AGGGCGAGTACAGCTCTGTCGGCGGCAGAATCTATCAG-GGTGAGGACGA 239
BSNT_00701___ 450 AATCGCCATCCAGAATGCCGTGTTTACGAGAAAAGCG----ACAGAACGT 495
|||||||||.||.||.||.||.|||.|..|| || ||.|||.|.
RBAM_006090__ 240 AATCGCCATACAAAACGCGGTCTTTTCCCGA----CGGGGTACGGAAAGA 285
BSNT_00701___ 496 GTCATGCGCTTTGCCTTCGAATTGGCGAAAAAACGGCGCAGCCATGTGAC 545
||.|||||.|.|||.||||||.|||||..||..|||||.|..||.||.||
RBAM_006090__ 286 GTGATGCGGTATGCTTTCGAACTGGCGGCAAGTCGGCGGAAACACGTCAC 335
BSNT_00701___ 546 AAGCGCCACAAAGTCTAACGGCATTTATCATGCGATGCCGTTTTGGGATG 595
||||||.||.||.||.|||||.|||..|||..||||||||||.|||||||
RBAM_006090__ 336 AAGCGCGACGAAATCAAACGGTATTGTTCACTCGATGCCGTTCTGGGATG 385
BSNT_00701___ 596 AAGTCTTTCAGCAGA---CAGCCGCTGATTATAGCGGAATCGAAAC--AT 640
|..|||||.| ||| |||||| .||.||...|||.||.||.|| ||
RBAM_006090__ 386 ACATCTTTAA--AGAGGTCAGCCG-GGAGTACGCCGGGATTGAGACGGAT 432
BSNT_00701___ 641 CATCTCAGCATATTGATGCGCTGGCCGCTTTTTTTGTGACGCGTCCGGAA 690
||.|||||.||.|||||.|||||.||.||.|.|||.||||..|||| |
RBAM_006090__ 433 --TCCCAGCACATCGATGCACTGGCGGCCTTCTATGTCACGCAGCCGG-A 479
BSNT_00701___ 691 ACG-TTTGATGTCATTGTGGCGAGCAACTTGTTCGGTGATATTTTAACCG 739
||| ||||||||||||||.||....||..|||||||.|||.|..|.||.|
RBAM_006090__ 480 ACGCTTTGATGTCATTGTCGCTTCGAATCTGTTCGGAGATGTGCTGACAG 529
BSNT_00701___ 740 ACATCAGCTCAAGCC--TGATGGGAAGCATCGGCATTGCGCCTTCTGCGA 787
|.|||.||.| |.| |.||||||||||||||.||.||.||..|.||.|
RBAM_006090__ 530 ATATCGGCGC--GGCGATTATGGGAAGCATCGGAATCGCTCCCGCAGCCA 577
BSNT_00701___ 788 ACATCAATCCATCCGGCAAATATCCGTCCATGTTTGAACCGGTTCACGGC 837
||||||||..|..||||||||||||.|||||||||||.||.|||||||||
RBAM_006090__ 578 ACATCAATGTAAACGGCAAATATCCTTCCATGTTTGAGCCTGTTCACGGC 627
BSNT_00701___ 838 TCAGCTCCTGACATTGCCGGACAGGGCCTTGCCAATCCGATTGGCCAGAT 887
||.||.||.||.||||.|||..|.||..||||||||||.||.|||||.||
RBAM_006090__ 628 TCCGCCCCGGATATTGTCGGGAAAGGAATTGCCAATCCTATAGGCCAAAT 677
BSNT_00701___ 888 TTGGACAGCGAAGCTGATGCTCGA-CCACTTCGGAGAGGAAGAGCTGGGG 936
.|||||.|||||..|.|||||||| .|| |||.||||.||.||.|| ||
RBAM_006090__ 678 ATGGACGGCGAAATTAATGCTCGATTCA-TTCCGAGAAGAGGAACT--GG 724
BSNT_00701___ 937 GCGA---------AAATTCTGGA-TGTAATGGAGCAAGTGACTGCCGACG 976
||.| |.|.||| | ||.|||||
RBAM_006090__ 725 GCCATCTCCTCTTACAATCT--ATTGAAATGG------------------ 754
BSNT_00701___ 977 GCATCA-AAACACGCGACATT---------------GGGGGACAAAGCA- 1009
||| ||||| |||.|||| ||.|| |||.||
RBAM_006090__ 755 ---TCACAAACA-GCGGCATTCTGACTCCTGATGTCGGCGG--AAAACAT 798
BSNT_00701___ 1010 -CAACGGCTGAGGTCACTGATGAAATCTGTTCGCGCTT------------ 1046
||||||..||.|||||| |.|||..||
RBAM_006090__ 799 TCAACGGAAGATGTCACT-----------TCCGCTATTATTTCTCAAATC 837
BSNT_00701___ 1047 AAGAAAGCTCTGA--- 1059
||||| |.||
RBAM_006090__ 838 AAGAA----CAGATAA 849
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