Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00561 and RBAM_006080

See DNA alignment / Visit BSNT_00561 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:18
# Commandline: needle
#    -asequence pep-align/BSNT_00561___ycgJ.1.9828.seq
#    -bsequence pep-align/RBAM_006080.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00561___ycgJ-RBAM_006080.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00561___ycgJ-RBAM_006080.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00561___ycgJ
# 2: RBAM_006080
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 267
# Identity:      89/267 (33.3%)
# Similarity:   125/267 (46.8%)
# Gaps:          21/267 ( 7.9%)
# Score: 380.5
# 
#
#=======================================

BSNT_00561___      1 ------MTNETPFSINAEMYRDEKVFAEGEDLGLMIKTAECRAEHRVLDI     44
                           ...:..|:.||..|......|.||||..::..:.......||||
RBAM_006080        1 MEDSIKQQAQRQFAKNAAKYVTSPGHAAGEDLAYLVSASGAEKHMDVLDI     50

BSNT_00561___     45 GAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGAENVRFQQGTA     94
                     ..|.||||.|.:|.|:..|..|.|:||:..|.:|....|..||.|::|.|
RBAM_006080       51 ATGGGHTANALAPLVRSVIAYDLTEEMLAAAEAFITGNGWTNVSFEKGDA    100

BSNT_00561___     95 ESLPFPDDSFDIITCRYAAHHFSDVRKAVSEVARVLKQDGHFLLVDHYAP    144
                     |.:||.|.:|||:|||.|||||.|||..|.|..||:|..|..||:|:.|.
RBAM_006080      101 EKMPFSDAAFDIVTCRIAAHHFPDVRAFVHEAFRVVKPGGRLLLIDNTAA    150

BSNT_00561___    145 EDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPI    194
                     |....|.|.|.:.:.||.||.|....:||...........:....:..|.
RBAM_006080      151 EKDEYDHFYNDIEKKRDQSHFRAWKKTEWLRFLETAGFRIESAVCFLKPF    200

BSNT_00561___    195 QYDSWIKRGGTPADR----EKQIIAHLNHASDEARDT---FCITLNQNGQ    237
                     |:..|.:|.|...::    |||::       |..||.   |.:..:|:|:
RBAM_006080      201 QFTVWCERAGLTEEKAALLEKQML-------DAPRDIQRFFSVEKDQSGR    243

BSNT_00561___    238 PISFCLKAILIQGIKR-    253
                     ...|..::.....|:. 
RBAM_006080      244 IAGFTGESACFCAIRPV    260


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