Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00561 and RBAM_006080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:18
# Commandline: needle
# -asequence dna-align/BSNT_00561___ycgJ.1.9828.seq
# -bsequence dna-align/RBAM_006080.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00561___ycgJ-RBAM_006080.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00561___ycgJ-RBAM_006080.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00561___ycgJ
# 2: RBAM_006080
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 976
# Identity: 441/976 (45.2%)
# Similarity: 441/976 (45.2%)
# Gaps: 407/976 (41.7%)
# Score: 885.0
#
#
#=======================================
BSNT_00561___ 1 ----ATGA--CAAATGAAACA-------------CCGTTTTCTATAAACG 31
|.|| | |||.||||| |..|||.|.|.|||||
RBAM_006080 1 ATGGAGGATTC-AATTAAACAGCAGGCGCAGCGGCAATTTGCCAAAAACG 49
BSNT_00561___ 32 CCGAGATGTATCGGGATGAAAAG----GTATTTGCCGAGGGGGAAGATTT 77
|||.||..||| .|||..|| |.|...||||..||.||.|||||
RBAM_006080 50 CCGCGAAATAT----GTGACTAGTCCAGGACACGCCGCAGGAGAGGATTT 95
BSNT_00561___ 78 GG--------GATTGATGATCAAAACGGCGGAATGCCGAGCAGAGCATCG 119
|| |.||.|...|| ||| |||||| |.|||||..
RBAM_006080 96 GGCGTATCTCGTTTCAGCTTC-------CGG--TGCCGA--AAAGCATAT 134
BSNT_00561___ 120 G---GTGCTGGATATCG-GAGCGGGCGCCGGCCATACGG----CGCTGGC 161
| ||||||||||||| || ||||.|.|||.||||||| ||||
RBAM_006080 135 GGACGTGCTGGATATCGCGA-CGGGAGGCGGACATACGGCTAACGCT--- 180
BSNT_00561___ 162 ATTTTCTCCTTATGTACAGGAGTGCATCGGTGTTGATGCG---------- 201
.|..|||||...|||| || || |||| || ||
RBAM_006080 181 -CTCGCTCCTCTCGTAC------GC-TC--TGTT-AT-CGCCTATGACCT 218
BSNT_00561___ 202 -ACGAAAGAGATG---------GTTGA-------------------GGTT 222
|||.||||.||| |.||| ||.|
RBAM_006080 219 CACGGAAGAAATGTTAGCAGCCGCTGAAGCATTTATAACCGGAAACGGAT 268
BSNT_00561___ 223 G------CGTCCTCCTTCGCGCAAGAAAAAGG---AGCTGAAAACGTACG 263
| ||| .||.||| |||||||| .|||||||
RBAM_006080 269 GGACGAACGT-GTCATTC------GAAAAAGGCGATGCTGAAA------- 304
BSNT_00561___ 264 CTTTCAGCAAGGAACGGCAGAGTCACTCCCCTTCCCCGACGATTCATTTG 313
||| |.||.||..||||.|.|.|.||.|
RBAM_006080 305 ------------------AGA-----TGCCGTTTTCCGATGCTGCTTTCG 331
BSNT_00561___ 314 ACATCATCACCTGCCGATACGCAGCCCACCATTTTTCAGATGTCCGCAAA 363
|.|||.||||.|||.||..|||.||.||.||||||.|.||||| ||.|
RBAM_006080 332 ATATCGTCACATGCAGAATCGCGGCGCATCATTTTCCCGATGT---CAGA 378
BSNT_00561___ 364 GC---TGT-----CAGCG----AGGTTGCACGCGTACTAAAACAGGACG- 400
|| ||| .|||| .||||| |.||||.||.||
RBAM_006080 379 GCCTTTGTTCATGAAGCGTTTCGGGTTG---------TCAAACCGGGCGG 419
BSNT_00561___ 401 --GACATTTTCTCTTAGTTGATCATTACGCGC--CTGAAGATCCCGTTCT 446
|||...||||| .|||| ||.||| ||| |||||.|
RBAM_006080 420 CAGACTGCTTCTC---ATTGA-CAATAC-CGCAGCTGAAAA--------- 455
BSNT_00561___ 447 TGATGAGTTTGTCAAT-----------CATT----TGAACCGGCTTC-GA 480
.|||||.|.||.|.|| |||| .|||.|||..|| ||
RBAM_006080 456 GGATGAATATGACCATTTTTATAATGACATTGAAAAGAAACGGGATCAGA 505
BSNT_00561___ 481 GACCCTTCC---CATGTTCGAGAAAGCTCATTATCAGAATGGCAGGCGAT 527
|.|.|||.| |.|| ||.||| |.|||||||||
RBAM_006080 506 GTCACTTTCGGGCGTG---GAAAAA-------AACAGAATGGC------- 538
BSNT_00561___ 528 GTTCAGCGCCAATCAACTGGCCTATCAAGACATCCAAAAGTGGAATTTGC 577
||.| |...|||| |||||.|| || .||.|
RBAM_006080 539 --TCCG------TTTTCTGG-------AGACAGCC------GG--CTTCC 565
BSNT_00561___ 578 CGATTCAATACGATAGCTGGATCAAACGAGGCGGAACTCCCGCTGACCG- 626
.||||.||| ||||||.|.|
RBAM_006080 566 GGATTGAAT------------------------------CCGCTGTCTGC 585
BSNT_00561___ 627 -----GGAAAAACAAATCA--TTGCCCACT----TGAAC---CACGCAT- 661
| |||.||..||| ||.||..|| ||||| ||.||.|
RBAM_006080 586 TTTTTG--AAACCATTTCAATTTACCGTCTGGTGTGAACGGGCAGGCCTG 633
BSNT_00561___ 662 ----CAGACGAAGCACGCGACACGTTCTGTATTACATTGAACCAAAACGG 707
.|||..|||| ||| ||||| ||.| |||||.|
RBAM_006080 634 ACTGAAGAGAAAGC-CGC------------ATTAC--TGGA--AAAACAG 666
BSNT_00561___ 708 A--CAGCCCAT-CTCCTTTTGTTTAAAAGCGATTTT--------GATACA 746
| |.| .|| |||||..||.|..|.||||.|||| || |
RBAM_006080 667 ATGCTG--GATGCTCCTCGTGATATACAGCGGTTTTTTTCTGTAGA---A 711
BSNT_00561___ 747 AGGGATAAAACGATAA---------------------------------- 762
|.|||| |.||.|
RBAM_006080 712 AAGGAT----CAATCAGGCCGTATTGCGGGCTTCACAGGTGAATCGGCCT 757
BSNT_00561___ 762 -------------------------- 762
RBAM_006080 758 GTTTCTGCGCGATCCGTCCCGTCTGA 783
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