Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00887 and RBAM_006060

See DNA alignment / Visit BSNT_00887 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence pep-align/BSNT_00887.1.9828.seq
#    -bsequence pep-align/RBAM_006060___ydzE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00887-RBAM_006060___ydzE.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00887-RBAM_006060___ydzE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00887
# 2: RBAM_006060___ydzE
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 290
# Identity:     217/290 (74.8%)
# Similarity:   249/290 (85.9%)
# Gaps:           3/290 ( 1.0%)
# Score: 1105.5
# 
#
#=======================================

BSNT_00887         1 MKNTLLGSIYLALAASIWGGMYVVVKVVVAVIPPFELVWIRYVIAILALL     50
                     |||||.||||||||||||||||||||||||||||.||||:||.:|:|:||
RBAM_006060__      1 MKNTLFGSIYLALAASIWGGMYVVVKVVVAVIPPLELVWLRYAVALLSLL     50

BSNT_00887        51 IVGLIRKQSWKIHKRDLLLIVAIGIVGNTISIVTQEYGTMLSSAQMGAII    100
                     ::.|..:||||:||||||||.|||::||||||||||.||.||:|||||||
RBAM_006060__     51 VLSLFTRQSWKVHKRDLLLIAAIGLIGNTISIVTQEIGTKLSTAQMGAII    100

BSNT_00887       101 TSSTPAFMVIFARLLLKEPLNIKKGTSIILATTGVLFIVGNGHIDTSNQL    150
                     |:|||||||:||||:|||.|.:|||.|..|||.|||.|||||.::.||||
RBAM_006060__    101 TASTPAFMVVFARLMLKERLTLKKGISTGLATIGVLLIVGNGDLNMSNQL    150

BSNT_00887       151 GGISLLVAALTWALMSVLIKRVPNSYSPILVTTYSTFVAIVALTPFVKPS    200
                     ||:|||.|||||||||||:||||.:|||::|||||..||.|.||||....
RBAM_006060__    151 GGLSLLAAALTWALMSVLMKRVPGNYSPLVVTTYSICVAFVILTPFTAGP    200

BSNT_00887       201 TIFTPL--LLDPKILGGLLYLGIVSTACAFLLWNRGLQLLNASSGGLFFF    248
                     ....||  |..|:|.|||||||::||||||:|||||||||||:|||||||
RBAM_006060__    201 LREIPLSQLTRPEIWGGLLYLGVISTACAFMLWNRGLQLLNAASGGLFFF    250

BSNT_00887       249 FQPLVGTLLGWILLGEQIGGTFWIGSFLILSGVLLVIKE-    287
                     ||||.||||||:||||.||||||||:.||:|||:||:|| 
RBAM_006060__    251 FQPLSGTLLGWLLLGETIGGTFWIGAALIVSGVVLVMKEK    290


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