Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00887 and RBAM_006060
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:36
# Commandline: needle
# -asequence dna-align/BSNT_00887.1.9828.seq
# -bsequence dna-align/RBAM_006060___ydzE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00887-RBAM_006060___ydzE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00887-RBAM_006060___ydzE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00887
# 2: RBAM_006060___ydzE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 900
# Identity: 606/900 (67.3%)
# Similarity: 606/900 (67.3%)
# Gaps: 63/900 ( 7.0%)
# Score: 1867.0
#
#
#=======================================
BSNT_00887 1 ATGAAAAATACCCTGTTAGGTTCTATATATTTAGCTTTAGCCGCTAGTAT 50
.||||||||||..||||.|||||.||.|||||.||.||.|||||||||||
RBAM_006060__ 1 TTGAAAAATACATTGTTCGGTTCGATTTATTTGGCATTGGCCGCTAGTAT 50
BSNT_00887 51 CTGGGGTGGCATGTATGTTGTGGTTAAGGTTGTTGTCGCAGTAATTCCGC 100
||||||.||.||||||||.||.||.||.|||||.||.||.||.|||||||
RBAM_006060__ 51 CTGGGGCGGTATGTATGTCGTTGTAAAAGTTGTGGTAGCGGTCATTCCGC 100
BSNT_00887 101 CTTTTGAATTGGTTTGGATCAGGTATGTCATCGCCATCCTTGCGCTTCTT 150
|..|||||.||||.|||.|.||.||||...|.||..|.|||.|||||
RBAM_006060__ 101 CGCTTGAACTGGTATGGCTGAGATATGCGGTGGCGCTTCTTTCGCTT--- 147
BSNT_00887 151 ATTGTTGGT----------TTGATAAGGAAACAATCTTGGAAAATTCATA 190
||||| ||.|.|.| .|||||.||||||.||||||
RBAM_006060__ 148 ----TTGGTTCTCAGTTTATTTACACG---CCAATCCTGGAAAGTTCATA 190
BSNT_00887 191 AGCGCGACCTTTTATTA---ATTGTTGCCATTGGAATTG-TTGGCAACAC 236
|.||.|| ||||||| ||.|.|||.||.|| |||| |.||||||||
RBAM_006060__ 191 AACGTGA---TTTATTACTGATCGCTGCGATCGG-ATTGATCGGCAACAC 236
BSNT_00887 237 CATTTCAATTGTTACACAAGAATAT-GGAACGATGTTGTCTTCAGCACAA 285
.|||||.||.||.||.||.||| || ||.||||..||.||..|.||.||.
RBAM_006060__ 237 GATTTCGATCGTCACGCAGGAA-ATCGGCACGAAATTATCAACCGCGCAG 285
BSNT_00887 286 ATGGGAGCAATTATTACGTCCTCCACACCAGCGTTCATGGTTATTTTTGC 335
|||||.||.|||||||||.|.|||||.||.||.||.||||||.|.|||||
RBAM_006060__ 286 ATGGGTGCGATTATTACGGCATCCACTCCCGCATTTATGGTTGTATTTGC 335
BSNT_00887 336 TCGTCTATTACTTAAAGAACCATTGAATATAAAAAAAGGAACTTCAATAA 385
.||.||..|..|.|||||||..||.|...|.||||||||||..||.|.|.
RBAM_006060__ 336 CCGGCTGATGTTGAAAGAACGGTTAACGCTGAAAAAAGGAATATCGACAG 385
BSNT_00887 386 TTTTAGCGACCACAGGCGTATTATTTATTGTTGGAAACGGACATATTGAT 435
...|.|||||.|..||.|||||..|.|||||.||.||||||.||.|..||
RBAM_006060__ 386 GGCTGGCGACGATCGGAGTATTGCTCATTGTGGGGAACGGAGATCTCAAT 435
BSNT_00887 436 ACCTCTAATCAGCTTGGCGGTATTTCTCTGCTTGTTGCAGCCCTTACATG 485
|..||.||.||||||||.|||.|.||.||.||.|.|||.||.||.|||||
RBAM_006060__ 436 ATGTCGAACCAGCTTGGGGGTCTCTCGCTTCTGGCTGCGGCGCTGACATG 485
BSNT_00887 486 GGCACTGATGTCAGTGCTTATCAAACGCGTGCCAAACAGCTATTCGCCTA 535
|||..|||||||.|||||.||.|||||.||.||...||..||.||.||..
RBAM_006060__ 486 GGCTTTGATGTCCGTGCTGATGAAACGGGTTCCGGGCAATTACTCACCGC 535
BSNT_00887 536 TACTTGTTACCACGTATTCAACTTTTGTGGC-CATTGTGGCA--CTAACT 582
|..|.||.||.|||||||| |.||||.|.| |||| ||.|| ||.||.
RBAM_006060__ 536 TTGTCGTCACAACGTATTC--CATTTGCGTCGCATT-TGTCATCCTGACC 582
BSNT_00887 583 CCTTTTGTAAAACCTAGCACGATTTTTACGCCACTACT--------GCTT 624
||.||| |.|.|..||.||.||..| |..|.|.|| ||||
RBAM_006060__ 583 CCGTTT---ACAGCGGGCCCGCTTCGT--GAGATTCCTTTGTCTCAGCTT 627
BSNT_00887 625 GAC----CCTAAAATTCTAGGTGGTCTTTTGTATTTGGGAATTGTTTCAA 670
|| |||.|.||....||.||.|||||.|||.||||..|..|.||||
RBAM_006060__ 628 -ACCCGGCCTGAGATATGGGGCGGACTTTTATATCTGGGTGTGATCTCAA 676
BSNT_00887 671 CCGCTTGTGCTTTTTTATTGTGGAACCGCGGCTTACAATTATTAAATGCC 720
|.||.||.||.||..|..|.|||||.|||||.||.||||||.|.|||||.
RBAM_006060__ 677 CTGCCTGCGCGTTCATGCTTTGGAATCGCGGATTGCAATTACTGAATGCG 726
BSNT_00887 721 TCAAGTGGAGGCCTCTTTTTCTTTTTTCAGCCTCTGGTT--GGAACCTTA 768
.||||.||.||.||.||||||||.||||||||.|| || ||.||.||.
RBAM_006060__ 727 GCAAGCGGCGGTCTGTTTTTCTTCTTTCAGCCGCT--TTCCGGGACATTG 774
BSNT_00887 769 CTCGGATGGATTCTGCTTGGAGA-ACAAATAGGCGGGACATTTTGGATAG 817
|||||.|||.|.|||||.||||| || .||.||.||.||.||.|||||.|
RBAM_006060__ 775 CTCGGCTGGCTGCTGCTGGGAGAGAC-GATCGGAGGAACCTTCTGGATCG 823
BSNT_00887 818 GTTCGTTTTTAATTCTTAGCGGTGTTTTATTAGTCATTAAAGAGTAA--- 864
||.||..|.|.|||.||...||.||..|..|.|||||.|||||..||
RBAM_006060__ 824 GTGCGGCTCTTATTGTTTCAGGCGTCGTTCTCGTCATGAAAGAAAAATAG 873
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