Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00887 and RBAM_006060

See Amino acid alignment / Visit BSNT_00887 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:36
# Commandline: needle
#    -asequence dna-align/BSNT_00887.1.9828.seq
#    -bsequence dna-align/RBAM_006060___ydzE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00887-RBAM_006060___ydzE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00887-RBAM_006060___ydzE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00887
# 2: RBAM_006060___ydzE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 900
# Identity:     606/900 (67.3%)
# Similarity:   606/900 (67.3%)
# Gaps:          63/900 ( 7.0%)
# Score: 1867.0
# 
#
#=======================================

BSNT_00887         1 ATGAAAAATACCCTGTTAGGTTCTATATATTTAGCTTTAGCCGCTAGTAT     50
                     .||||||||||..||||.|||||.||.|||||.||.||.|||||||||||
RBAM_006060__      1 TTGAAAAATACATTGTTCGGTTCGATTTATTTGGCATTGGCCGCTAGTAT     50

BSNT_00887        51 CTGGGGTGGCATGTATGTTGTGGTTAAGGTTGTTGTCGCAGTAATTCCGC    100
                     ||||||.||.||||||||.||.||.||.|||||.||.||.||.|||||||
RBAM_006060__     51 CTGGGGCGGTATGTATGTCGTTGTAAAAGTTGTGGTAGCGGTCATTCCGC    100

BSNT_00887       101 CTTTTGAATTGGTTTGGATCAGGTATGTCATCGCCATCCTTGCGCTTCTT    150
                     |..|||||.||||.|||.|.||.||||...|.||..|.|||.|||||   
RBAM_006060__    101 CGCTTGAACTGGTATGGCTGAGATATGCGGTGGCGCTTCTTTCGCTT---    147

BSNT_00887       151 ATTGTTGGT----------TTGATAAGGAAACAATCTTGGAAAATTCATA    190
                         |||||          ||.|.|.|   .|||||.||||||.||||||
RBAM_006060__    148 ----TTGGTTCTCAGTTTATTTACACG---CCAATCCTGGAAAGTTCATA    190

BSNT_00887       191 AGCGCGACCTTTTATTA---ATTGTTGCCATTGGAATTG-TTGGCAACAC    236
                     |.||.||   |||||||   ||.|.|||.||.|| |||| |.||||||||
RBAM_006060__    191 AACGTGA---TTTATTACTGATCGCTGCGATCGG-ATTGATCGGCAACAC    236

BSNT_00887       237 CATTTCAATTGTTACACAAGAATAT-GGAACGATGTTGTCTTCAGCACAA    285
                     .|||||.||.||.||.||.||| || ||.||||..||.||..|.||.||.
RBAM_006060__    237 GATTTCGATCGTCACGCAGGAA-ATCGGCACGAAATTATCAACCGCGCAG    285

BSNT_00887       286 ATGGGAGCAATTATTACGTCCTCCACACCAGCGTTCATGGTTATTTTTGC    335
                     |||||.||.|||||||||.|.|||||.||.||.||.||||||.|.|||||
RBAM_006060__    286 ATGGGTGCGATTATTACGGCATCCACTCCCGCATTTATGGTTGTATTTGC    335

BSNT_00887       336 TCGTCTATTACTTAAAGAACCATTGAATATAAAAAAAGGAACTTCAATAA    385
                     .||.||..|..|.|||||||..||.|...|.||||||||||..||.|.|.
RBAM_006060__    336 CCGGCTGATGTTGAAAGAACGGTTAACGCTGAAAAAAGGAATATCGACAG    385

BSNT_00887       386 TTTTAGCGACCACAGGCGTATTATTTATTGTTGGAAACGGACATATTGAT    435
                     ...|.|||||.|..||.|||||..|.|||||.||.||||||.||.|..||
RBAM_006060__    386 GGCTGGCGACGATCGGAGTATTGCTCATTGTGGGGAACGGAGATCTCAAT    435

BSNT_00887       436 ACCTCTAATCAGCTTGGCGGTATTTCTCTGCTTGTTGCAGCCCTTACATG    485
                     |..||.||.||||||||.|||.|.||.||.||.|.|||.||.||.|||||
RBAM_006060__    436 ATGTCGAACCAGCTTGGGGGTCTCTCGCTTCTGGCTGCGGCGCTGACATG    485

BSNT_00887       486 GGCACTGATGTCAGTGCTTATCAAACGCGTGCCAAACAGCTATTCGCCTA    535
                     |||..|||||||.|||||.||.|||||.||.||...||..||.||.||..
RBAM_006060__    486 GGCTTTGATGTCCGTGCTGATGAAACGGGTTCCGGGCAATTACTCACCGC    535

BSNT_00887       536 TACTTGTTACCACGTATTCAACTTTTGTGGC-CATTGTGGCA--CTAACT    582
                     |..|.||.||.||||||||  |.||||.|.| |||| ||.||  ||.||.
RBAM_006060__    536 TTGTCGTCACAACGTATTC--CATTTGCGTCGCATT-TGTCATCCTGACC    582

BSNT_00887       583 CCTTTTGTAAAACCTAGCACGATTTTTACGCCACTACT--------GCTT    624
                     ||.|||   |.|.|..||.||.||..|  |..|.|.||        ||||
RBAM_006060__    583 CCGTTT---ACAGCGGGCCCGCTTCGT--GAGATTCCTTTGTCTCAGCTT    627

BSNT_00887       625 GAC----CCTAAAATTCTAGGTGGTCTTTTGTATTTGGGAATTGTTTCAA    670
                      ||    |||.|.||....||.||.|||||.|||.||||..|..|.||||
RBAM_006060__    628 -ACCCGGCCTGAGATATGGGGCGGACTTTTATATCTGGGTGTGATCTCAA    676

BSNT_00887       671 CCGCTTGTGCTTTTTTATTGTGGAACCGCGGCTTACAATTATTAAATGCC    720
                     |.||.||.||.||..|..|.|||||.|||||.||.||||||.|.|||||.
RBAM_006060__    677 CTGCCTGCGCGTTCATGCTTTGGAATCGCGGATTGCAATTACTGAATGCG    726

BSNT_00887       721 TCAAGTGGAGGCCTCTTTTTCTTTTTTCAGCCTCTGGTT--GGAACCTTA    768
                     .||||.||.||.||.||||||||.||||||||.||  ||  ||.||.||.
RBAM_006060__    727 GCAAGCGGCGGTCTGTTTTTCTTCTTTCAGCCGCT--TTCCGGGACATTG    774

BSNT_00887       769 CTCGGATGGATTCTGCTTGGAGA-ACAAATAGGCGGGACATTTTGGATAG    817
                     |||||.|||.|.|||||.||||| || .||.||.||.||.||.|||||.|
RBAM_006060__    775 CTCGGCTGGCTGCTGCTGGGAGAGAC-GATCGGAGGAACCTTCTGGATCG    823

BSNT_00887       818 GTTCGTTTTTAATTCTTAGCGGTGTTTTATTAGTCATTAAAGAGTAA---    864
                     ||.||..|.|.|||.||...||.||..|..|.|||||.|||||..||   
RBAM_006060__    824 GTGCGGCTCTTATTGTTTCAGGCGTCGTTCTCGTCATGAAAGAAAAATAG    873


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00887 and RBAM_006060

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
