Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00905 and RBAM_005850

See DNA alignment / Visit BSNT_00905 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:37
# Commandline: needle
#    -asequence pep-align/BSNT_00905___ydeK.1.9828.seq
#    -bsequence pep-align/RBAM_005850___ydeK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00905___ydeK-RBAM_005850___ydeK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00905___ydeK-RBAM_005850___ydeK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00905___ydeK
# 2: RBAM_005850___ydeK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 294
# Identity:     243/294 (82.7%)
# Similarity:   263/294 (89.5%)
# Gaps:           7/294 ( 2.4%)
# Score: 1264.0
# 
#
#=======================================

BSNT_00905___      1 MNKTTNGWINGFIGVLIFSGSLPATRLAVSDFDPLFLTVCRAAIAGVLAG     50
                     |.|..||||||||||||||||||||||||:||||:|||||||||||:|||
RBAM_005850__      1 MKKAANGWINGFIGVLIFSGSLPATRLAVADFDPVFLTVCRAAIAGILAG     50

BSNT_00905___     51 GLLLIFRQQHPAKRDLISLLVVAFGVVIGFPLLTALALQHVTSAHAIVFI    100
                     .|||||:::.|||.|:|||:.||.||||||||||||||||||||||||:|
RBAM_005850__     51 ALLLIFQEKRPAKSDIISLITVALGVVIGFPLLTALALQHVTSAHAIVYI    100

BSNT_00905___    101 GLLPLATAVFGVLRGGERPRPVFWIFSTVGSLLVAGFALIQGGGSSPLGD    150
                     ||||||||:||||||||||||||||||..||:||||:||:|||.||||||
RBAM_005850__    101 GLLPLATAIFGVLRGGERPRPVFWIFSAAGSILVAGYALLQGGESSPLGD    150

BSNT_00905___    151 AYMLASIVVCGLGYAEGARLSRRLGNWQVISWALVLSLPLMLPLSFFFTP    200
                     .||:|||:|||||||||||||||||||||||||||||||||..|||.|.|
RBAM_005850__    151 TYMIASIIVCGLGYAEGARLSRRLGNWQVISWALVLSLPLMFILSFCFMP    200

BSNT_00905___    201 DSWSAIGVPALLSLAYVSLFSMLIGFVFWYRGLAQGGIAAVGQLQLLQPF    250
                     ||||.||.||||||||||:|||||||||||||||||||||||||||||||
RBAM_005850__    201 DSWSNIGAPALLSLAYVSIFSMLIGFVFWYRGLAQGGIAAVGQLQLLQPF    250

BSNT_00905___    251 FGLLLASVILHEKVGWALVAVNIAVIMCVAAARRFAK-------    287
                     ||||||::|||||.||.|.|||:.||.||||||:||.       
RBAM_005850__    251 FGLLLAAMILHEKAGWELAAVNVGVIACVAAARQFANQSEKAEQ    294


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