Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00905 and RBAM_005850
See
Amino acid alignment /
Visit
BSNT_00905 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:37
# Commandline: needle
# -asequence dna-align/BSNT_00905___ydeK.1.9828.seq
# -bsequence dna-align/RBAM_005850___ydeK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00905___ydeK-RBAM_005850___ydeK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00905___ydeK-RBAM_005850___ydeK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00905___ydeK
# 2: RBAM_005850___ydeK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 887
# Identity: 686/887 (77.3%)
# Similarity: 686/887 (77.3%)
# Gaps: 25/887 ( 2.8%)
# Score: 2705.0
#
#
#=======================================
BSNT_00905___ 1 ATGAACAAAACAACAAATGGCTGGATAAATGGTTTTATAGGCGTACTCAT 50
|||||.|||.|..||||.||||||||.||.||.|||||.|||||.|||||
RBAM_005850__ 1 ATGAAGAAAGCCGCAAACGGCTGGATTAACGGATTTATCGGCGTGCTCAT 50
BSNT_00905___ 51 TTTCAGCGGCTCGCTGCCTGCGACCCGTTTGGCTGTGTCGGACTTCGATC 100
|||||||||||||||.||.||||||||.||||||||..|||||||.||.|
RBAM_005850__ 51 TTTCAGCGGCTCGCTTCCCGCGACCCGCTTGGCTGTAGCGGACTTTGACC 100
BSNT_00905___ 101 CGCTGTTCCTCACCGTATGCCGCGCTGCGATAGCTGGTGTACTGGCGGGA 150
||.|.||.|||||||||||||||||.||||||||.|||.||.||||.||.
RBAM_005850__ 101 CGGTATTTCTCACCGTATGCCGCGCCGCGATAGCCGGTATATTGGCAGGC 150
BSNT_00905___ 151 GGTCTCCTTCTCATCTTCCGGCAGCAGCATCCTGCCAAAAGAGACCTCAT 200
|.|||.||.|||||.||.|.|.||.|.|..|||||||||||.|||.||||
RBAM_005850__ 151 GCTCTGCTCCTCATTTTTCAGGAGAAACGCCCTGCCAAAAGCGACATCAT 200
BSNT_00905___ 201 TTCATTATTAGTGGTAGCGTTTGGCGTAGTGATTGGTTTCCCGTTGCTGA 250
||||.||.||...||||||.|.|||||.|||||.|||||||||.||||.|
RBAM_005850__ 201 TTCACTAATAACAGTAGCGCTCGGCGTCGTGATCGGTTTCCCGCTGCTTA 250
BSNT_00905___ 251 CAGCTTTAGCGCTTCAGCATGTCACATCCGCACACGCCATTGTCTTCATT 300
||||.||||||||||||||||||||||||||.||.||||||||||.|||.
RBAM_005850__ 251 CAGCCTTAGCGCTTCAGCATGTCACATCCGCTCATGCCATTGTCTACATC 300
BSNT_00905___ 301 GGACTTCTTCCACTCGCAACGGCGGTCTTCGGCGTACTGCGCGGGGGTGA 350
||||||||.||.||.||.||||||.||||||||||||||||.||.||.||
RBAM_005850__ 301 GGACTTCTCCCGCTTGCGACGGCGATCTTCGGCGTACTGCGAGGAGGCGA 350
BSNT_00905___ 351 ACGCCCTCGGCCCGTCTTCTGGATTTTCTCAACCGTTGGCAGCTTGTTAG 400
|||.||..||||.|||||.|||||||||||..|.|..||||||.|..|.|
RBAM_005850__ 351 ACGGCCCAGGCCGGTCTTTTGGATTTTCTCGGCTGCCGGCAGCATCCTCG 400
BSNT_00905___ 401 TAGCAGGTTTCGCCCTCATTCAGGGGGGAGGTTCATCCCCGCTTGGCGAC 450
||||.||.|..||.||..|.||.||.||||..||.||.|||||.||.||.
RBAM_005850__ 401 TAGCCGGATATGCTCTGCTGCAAGGAGGAGAATCCTCTCCGCTCGGTGAT 450
BSNT_00905___ 451 GCGTACATGCTGGCTTCTATTGTCGTATGCGGTCTTGGTTATGCGGAAGG 500
.||||||||.|.|||||.|||.||||.||||||||.||||||||.|||||
RBAM_005850__ 451 ACGTACATGATCGCTTCGATTATCGTGTGCGGTCTCGGTTATGCCGAAGG 500
BSNT_00905___ 501 GGCAAGGCTTTCACGGCGTCTGGGGAATTGGCAGGTGATCTCATGGGCAC 550
.||..|.||.||.|||||.||.||.||.||||||||||||||.|||||||
RBAM_005850__ 501 CGCCCGCCTCTCCCGGCGGCTTGGCAACTGGCAGGTGATCTCTTGGGCAC 550
BSNT_00905___ 551 TCGTTCTGTCGCTTCCTCTTATGCTGCCAT--TGTCGTTCTTTTTTACGC 598
|||||.|.||||||||.||||||.| ||| ||||.||||..||.|.||
RBAM_005850__ 551 TCGTTTTATCGCTTCCCCTTATGTT--CATCCTGTCTTTCTGCTTCATGC 598
BSNT_00905___ 599 CGGACTCATGGTCGGCGATCGGCGTTCCCGCACTGCTCAGTCTTGCATAT 648
|||||||||||||....|||||||..||||||||||||||||||||||||
RBAM_005850__ 599 CGGACTCATGGTCAAACATCGGCGCGCCCGCACTGCTCAGTCTTGCATAT 648
BSNT_00905___ 649 GTATCCTTATTCAGCATGCTGATCGGCTTTGTGTTCTGGTATCGAGGTCT 698
||.||..||||||||||||||||||||||.||.|||||||||||.||.||
RBAM_005850__ 649 GTCTCAATATTCAGCATGCTGATCGGCTTCGTATTCTGGTATCGCGGACT 698
BSNT_00905___ 699 TGCCCAAGGCGGAATTGCGGCGGTTGGGCAGCTCCAGCTTCTCCAGCCTT 748
.|||||.||.||.||.||.|||||.||.|||||.||||||||.|||||||
RBAM_005850__ 699 CGCCCAGGGAGGCATCGCCGCGGTCGGACAGCTGCAGCTTCTGCAGCCTT 748
BSNT_00905___ 749 TTTTTGGACTGCTGCTTGCCTCAGTGATTCTACACGAGAAAGTGGGCTGG 798
|.||.||||||.||||.|||.|..|||||||.||.||.||||..||.|||
RBAM_005850__ 749 TCTTCGGACTGTTGCTGGCCGCCATGATTCTCCATGAAAAAGCAGGATGG 798
BSNT_00905___ 799 GCACTCGTAGCAGTGAATATCGCCGTTATCATGTGCGTTGCGGCTGCACG 848
|.|||.|..||.||||||.|||.|||||||...|||||.|||||.||.||
RBAM_005850__ 799 GAACTTGCGGCGGTGAATGTCGGCGTTATCGCTTGCGTGGCGGCCGCCCG 848
BSNT_00905___ 849 GCGATTTGCAAAGTAA--------------------- 864
||..||.|||||..||
RBAM_005850__ 849 GCAGTTCGCAAATCAATCAGAAAAGGCCGAACAATGA 885
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.