Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_02199 and RBAM_005630
See
DNA alignment /
Visit
BSNT_02199 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence pep-align/BSNT_02199___ykkA.1.9828.seq
# -bsequence pep-align/RBAM_005630___ykkA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_02199___ykkA-RBAM_005630___ykkA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02199___ykkA-RBAM_005630___ykkA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02199___ykkA
# 2: RBAM_005630___ykkA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 178
# Identity: 81/178 (45.5%)
# Similarity: 110/178 (61.8%)
# Gaps: 21/178 (11.8%)
# Score: 418.5
#
#
#=======================================
BSNT_02199___ 1 MKDLSIRNDMAPTVSLLYSAVEENSLRLASIVSHMTHSELYYKGRCQTKN 50
.:|||||.||..||.||||.|:..|:.|||..||.|
RBAM_005630__ 1 --------------MMLYSAVNENYSRLISIVSDMSQQEIAYKGPNQTYN 36
BSNT_02199___ 51 STAQLLHHITNVDIRWVWRIKENRIPNHIEQTYGPMTDESGRLPVPVNQP 100
|||||:.|:.|||:.|::|||...||..:|:.||||.|::.:||. ::..
RBAM_005630__ 37 STAQLIRHLANVDLNWIFRIKGEPIPKQLEEKYGPMLDQNNKLPF-ISGV 85
BSNT_02199___ 101 DLDELLKRHQHVVEELKSVCFTLTENALNQPLSFEGD-TATIRWGIWHMA 149
.|:::|..::.|....||||:.||::.||..:.:|.: .|||:|||||||
RBAM_005630__ 86 SLEQILTDYEEVFSMFKSVCYQLTDDQLNHTVDYEAEKQATIQWGIWHMA 135
BSNT_02199___ 150 DHNRYHQAHIEALKK--EWKQDVAKYER 175
||||||||||..|:| |.||.:..
RBAM_005630__ 136 DHNRYHQAHIHQLRKWFEEKQKLGS--- 160
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.