Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_02199 and RBAM_005630

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence pep-align/BSNT_02199___ykkA.1.9828.seq
#    -bsequence pep-align/RBAM_005630___ykkA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_02199___ykkA-RBAM_005630___ykkA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_02199___ykkA-RBAM_005630___ykkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02199___ykkA
# 2: RBAM_005630___ykkA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 178
# Identity:      81/178 (45.5%)
# Similarity:   110/178 (61.8%)
# Gaps:          21/178 (11.8%)
# Score: 418.5
# 
#
#=======================================

BSNT_02199___      1 MKDLSIRNDMAPTVSLLYSAVEENSLRLASIVSHMTHSELYYKGRCQTKN     50
                                   .:|||||.||..||.||||.|:..|:.|||..||.|
RBAM_005630__      1 --------------MMLYSAVNENYSRLISIVSDMSQQEIAYKGPNQTYN     36

BSNT_02199___     51 STAQLLHHITNVDIRWVWRIKENRIPNHIEQTYGPMTDESGRLPVPVNQP    100
                     |||||:.|:.|||:.|::|||...||..:|:.||||.|::.:||. ::..
RBAM_005630__     37 STAQLIRHLANVDLNWIFRIKGEPIPKQLEEKYGPMLDQNNKLPF-ISGV     85

BSNT_02199___    101 DLDELLKRHQHVVEELKSVCFTLTENALNQPLSFEGD-TATIRWGIWHMA    149
                     .|:::|..::.|....||||:.||::.||..:.:|.: .|||:|||||||
RBAM_005630__     86 SLEQILTDYEEVFSMFKSVCYQLTDDQLNHTVDYEAEKQATIQWGIWHMA    135

BSNT_02199___    150 DHNRYHQAHIEALKK--EWKQDVAKYER    175
                     ||||||||||..|:|  |.||.:..   
RBAM_005630__    136 DHNRYHQAHIHQLRKWFEEKQKLGS---    160


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