Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02199 and RBAM_005630
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02199___ykkA.1.9828.seq
# -bsequence dna-align/RBAM_005630___ykkA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02199___ykkA-RBAM_005630___ykkA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02199___ykkA-RBAM_005630___ykkA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02199___ykkA
# 2: RBAM_005630___ykkA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 594
# Identity: 323/594 (54.4%)
# Similarity: 323/594 (54.4%)
# Gaps: 177/594 (29.8%)
# Score: 790.0
#
#
#=======================================
BSNT_02199___ 1 ATGAAGGACTTATCCATAAGAAACGACATGGCGCCAACGGTCAGTCTGCT 50
||.| ||||
RBAM_005630__ 1 ---------------------------------------GTGA---TGCT 8
BSNT_02199___ 51 GTATTCCGCAGTGGAAGAAA---ACAGTCTCCGTCTGGCTT-CTATC--- 93
||||||.||.||..|.|||| ||||.| |||| .||||
RBAM_005630__ 9 GTATTCTGCCGTTAATGAAAATTACAGCC--------GCTTAATATCCAT 50
BSNT_02199___ 94 ---GTAAGCCATATGACACA-CA-GTGAACTTTACTATAAGGGGCGCTGC 138
||.|| |.|||.|||| || |.||.|..| |||||.||.| |
RBAM_005630__ 51 TGTGTCAG--ACATGTCACAGCAGGAGATCGCT--TATAAAGGAC----C 92
BSNT_02199___ 139 ----CAAACAAAAAACAGCACGGCTCAGCTTTTGCACCATA-------TC 177
||||||.|.||.||.||.|||||||| .||| |.
RBAM_005630__ 93 AAATCAAACATACAATAGTACAGCTCAGCT-------AATAAGACACTTA 135
BSNT_02199___ 178 ACAAATGTTGATATCAGATGGGTCTGGCGTATCAAGGAAAATCGGATACC 227
.|||||||||||.|||..|||.|.|...|.||.||||...|.|.||||||
RBAM_005630__ 136 GCAAATGTTGATCTCAACTGGATATTCAGAATAAAGGGTGAACCGATACC 185
BSNT_02199___ 228 GAACCATATTGAACAGACATACGGCCCGATGACAGATGAAAGCGGAC--- 274
.||.||..|||||.|||..||.||.||.|||..||||.| |.||
RBAM_005630__ 186 AAAGCAGCTTGAAGAGAAGTATGGACCAATGTTAGATCA----GAACAAT 231
BSNT_02199___ 275 -GGCTGCCT----GTACCGGTGAATCAGCCAGACTTAGATGAA---CTC- 315
.|||.||| .|.||||||..||| |||||..|| |||
RBAM_005630__ 232 AAGCTCCCTTTCATTTCCGGTGTTTCA-------TTAGAACAAATTCTCA 274
BSNT_02199___ 316 CTGA----AAAGACA----TCAGCATGTAGTAGAGGAGCTGAAATCGGTA 357
|||| .|||| | ||||||||| |.||.||.||.
RBAM_005630__ 275 CTGATTATGAAGA-AGTATTCAGCATGT-----------TTAAGTCTGTT 312
BSNT_02199___ 358 TGCT-TCACTTTAACAGAAAAT--GCTTTGAA----CCAGCCGCTT-TCC 399
||.| ||| .|||||.||..|| || |||| .|||..|.|| |
RBAM_005630__ 313 TGTTATCA-GTTAACTGACGATCAGC--TGAATCATACAGTAGATTAT-- 357
BSNT_02199___ 400 TTCGAAGGTG----ACACCGCGACGATACGATGGGGAATTTGGCATATGG 445
||||..| ||| .||.||.||.|.|||||||||.||||||||||
RBAM_005630__ 358 ---GAAGCAGAAAAACA-AGCAACCATTCAATGGGGAATATGGCATATGG 403
BSNT_02199___ 446 CAGATCATAACCGCTATCATCAGGCACATATTGA--AGC-TCTCAAA--- 489
||||||||||..|.||||||||.||.||||||.| ||| ||.||||
RBAM_005630__ 404 CAGATCATAATAGATATCATCAAGCTCATATTCATCAGCTTCGCAAATGG 453
BSNT_02199___ 490 ---AAAGAATGGAAGCAGGA--TGTGGCGAAGTATGAACGCTAA 528
.|||| |||.|||.| | |||| ||| |||
RBAM_005630__ 454 TTTGAAGA---GAAACAGAAACT-TGGC--AGT--------TAA 483
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