Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_03908 and RBAM_005590

See DNA alignment / Visit BSNT_03908 in genome browser / Return to Orthologue table

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# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:11
# Commandline: needle
#    -asequence pep-align/BSNT_03908___yraH.1.9828.seq
#    -bsequence pep-align/RBAM_005590.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03908___yraH-RBAM_005590.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03908___yraH-RBAM_005590.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03908___yraH
# 2: RBAM_005590
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 144
# Identity:      38/144 (26.4%)
# Similarity:    65/144 (45.1%)
# Gaps:          20/144 (13.9%)
# Score: 123.5
# 
#
#=======================================

BSNT_03908___      1 --MKLLQIRLLVNDFKKSVEFYKDSLGLP---ISWLENEMEYALFDNGET     45
                       .::..|.|..::.:||:.||:|.||||   |:..|.|.:...|.:.:|
RBAM_005590        1 MKPRITVITLGADNLEKSLHFYRDGLGLPTEGIAGTEFEHDAVAFFDLQT     50

BSNT_03908___     46 --KIELLSRETMAEIVGEEKISLEGEAQSKFLLQFKV---EDVDKTYDDL     90
                       |:.:.:|:   :|..|..::|...:.::|.|...|   .:.||..:..
RBAM_005590       51 GLKLAIWNRK---DIAHETNVTLTAPSPAEFTLGHNVGSKAEADKVMEQA     97

BSNT_03908___     91 HEKGVKCVNKPHDRKEWSARVAHFRDPDHNLIEIYKML------    128
                     .:.|....:..|| ..|.....||:|||.:|.||....      
RBAM_005590       98 KQAGATITDPAHD-TFWGGYAGHFQDPDGHLWEIVWNPHWDAIE    140


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