Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03908 and RBAM_005590
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:11
# Commandline: needle
# -asequence dna-align/BSNT_03908___yraH.1.9828.seq
# -bsequence dna-align/RBAM_005590.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03908___yraH-RBAM_005590.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03908___yraH-RBAM_005590.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03908___yraH
# 2: RBAM_005590
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 502
# Identity: 241/502 (48.0%)
# Similarity: 241/502 (48.0%)
# Gaps: 194/502 (38.6%)
# Score: 417.5
#
#
#=======================================
BSNT_03908___ 1 ATGAAGCTG----TTACA--AATTAGACTTTTGGTGAATG---ATTTTAA 41
|||||||.| ||||| |||| |||||.||.|.| | |||| |
RBAM_005590 1 ATGAAGCCGCGGATTACAGTAATT--ACTTTAGGCGCA-GACAATTT--A 45
BSNT_03908___ 42 GAAAA---GCGTCGAGTTTTACAAAGATTCATTAGGACTTCC-------- 80
||||| ||.|| |.||.||...||||...||.||.||.||
RBAM_005590 46 GAAAAATCGCTTC-ACTTCTATCGAGATGGCTTGGGTCTGCCTACAGAGG 94
BSNT_03908___ 81 -AATAAGTTGGTTAGAGAA--TGAA----ATGGAATATGCACTCTTTGA- 122
||| ||..|| ||.|||| |||| |||.|.| |||..|.|||||
RBAM_005590 95 GAAT-AGCCGG-TACAGAATTTGAACATGATGCAGT-TGCCTTTTTTGAC 141
BSNT_03908___ 123 -TAATGGGGAAACGAAAATAGAGCTTTTATCTCGAGAAACGATGGC---- 167
|| .|||.||..|| ||||| |.||
RBAM_005590 142 TTA-----------CAAACAGGACT----------GAAAC--TTGCCATT 168
BSNT_03908___ 168 TGAAATCG--------TTGGAGAGGAAAAAA----TATCGTTGGAA---- 201
||.||.|| |.|.|.|.||||.|| || |||| ||
RBAM_005590 169 TGGAACCGCAAAGACATCGCACATGAAACAAACGTTA-CGTT--AACTGC 215
BSNT_03908___ 202 ----------GGAGAAGCTCAAT-----CAAAATTTTTGCTTCAGTTTAA 236
|.||||..|..|| ||.|||.||.| ||| |||
RBAM_005590 216 GCCAAGCCCTGCAGAATTTACATTAGGACATAATGTTGG---CAG--TAA 260
BSNT_03908___ 237 GGTAGAAGATGTTGATAAAACGT-ATGACGATTTACACGAAAA------A 279
||..||.|..|||||| || ||| || |||.|.||| |
RBAM_005590 261 ---AGCTGAAGCCGATAAA--GTCATG--GA---ACAGGCAAAACAGGCA 300
BSNT_03908___ 280 GGA-----GTTAAATGTGTGAATAAACCG--CATGATCGCAAGGAA---- 318
||| |.|||.|| |..||| |||||| |
RBAM_005590 301 GGAGCAACGATAACTG-------ATCCCGCTCATGAT--------ACTTT 335
BSNT_03908___ 319 -TGGAGTGCCCGA---GTTGCTCACTTCAGAGATCCAGAT---CA----- 356
||| |.|.|| |..|.|||||||..|||.||.||| ||
RBAM_005590 336 TTGG---GGCGGATACGCCGGTCACTTCCAAGACCCCGATGGACACTTAT 382
BSNT_03908___ 357 ---TAATCTGATTGAAAT---------------AT---ATAAAATGTTAT 385
.|||| |.|||.||| || ||||
RBAM_005590 383 GGGAAATC-GTTTGGAATCCGCACTGGGATGCAATTGAATAA-------- 423
BSNT_03908___ 386 GA 387
RBAM_005590 423 -- 423
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