Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00380 and RBAM_005520

See DNA alignment / Visit BSNT_00380 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence pep-align/BSNT_00380___ybfA.1.9828.seq
#    -bsequence pep-align/RBAM_005520___ybfA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00380___ybfA-RBAM_005520___ybfA.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00380___ybfA-RBAM_005520___ybfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00380___ybfA
# 2: RBAM_005520___ybfA
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 309
# Identity:     185/309 (59.9%)
# Similarity:   245/309 (79.3%)
# Gaps:           8/309 ( 2.6%)
# Score: 1022.0
# 
#
#=======================================

BSNT_00380___      1 MGIDLKTRESSVGLKFRKFNRFYTNVLGFLNEHIYDSPFSLTETRILFEI     50
                            .|:...|.||:||||||::|||||||||||||||||||||:||
RBAM_005520__      1 -------METKRVLAFRQFNRFYTDILGFLNEHIYDSPFSLTETRILYEI     43

BSNT_00380___     51 YNTPNCTAKALQDKLGLDRGYVSRIVKQFEIEDLIYKQRSKDDARHHYIF    100
                     |||.:||||.:|::|.|:||||||||::||.:..||||:.::|.|:|:::
RBAM_005520__     44 YNTADCTAKIIQERLDLNRGYVSRIVRKFEEKGFIYKQKCREDGRNHFLY     93

BSNT_00380___    101 VTETGKTIYKKLEEKANEQVELMLKEINQKEQQKLSEAMAEIEEILSQSL    150
                     ||.:|::|||.||:|||:|||.:|:.|:::||:||..:|..|:.||..|.
RBAM_005520__     94 VTASGESIYKSLEKKANQQVEYILERIDKEEQEKLVHSMETIQNILQHSF    143

BSNT_00380___    151 SARTSEISIRDYFLSEDIQLLIEKQRQFYAEAHGWDDTFLAYLQETFDAD    200
                     ..:.|.||||||:.|||::.:|||||.||||:||||||||:||.:||.||
RBAM_005520__    144 YDKESPISIRDYYTSEDVKNIIEKQRLFYAESHGWDDTFLSYLHDTFKAD    193

BSNT_00380___    201 IEKIWIAESGGKFAGSVGLVKHDEKTVQLRWFLVDADFRGRGLGTQLLEH    250
                     |:|||:||||.:|||.:|||..||||.||||||||..|:.:|:|::|::.
RBAM_005520__    194 IKKIWVAESGNQFAGCIGLVNDDEKTGQLRWFLVDPSFQRKGVGSRLIKA    243

BSNT_00380___    251 LVAYCQDMKFDRIFLWTVSTMAEARPLYKKFGFRISEVKQEAPLWGQQLT    300
                     ||.||::..::|||||||..|:.|||||||.||.|:|:.:|.||||..|.
RBAM_005520__    244 LVQYCKENGYERIFLWTVRDMSTARPLYKKNGFEITEIHEEKPLWGSNLI    293

BSNT_00380___    301 EERWDLELS    309
                     |||||||| 
RBAM_005520__    294 EERWDLEL-    301


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