Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00380 and RBAM_005520

See Amino acid alignment / Visit BSNT_00380 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:09
# Commandline: needle
#    -asequence dna-align/BSNT_00380___ybfA.1.9828.seq
#    -bsequence dna-align/RBAM_005520___ybfA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00380___ybfA-RBAM_005520___ybfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00380___ybfA-RBAM_005520___ybfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00380___ybfA
# 2: RBAM_005520___ybfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 958
# Identity:     633/958 (66.1%)
# Similarity:   633/958 (66.1%)
# Gaps:          80/958 ( 8.4%)
# Score: 1848.5
# 
#
#=======================================

BSNT_00380___      1 GTGGGGATTGATTTGAAAACAAGAGAATCATCTGTCGGATTAAAATTCAG     50
                                 |||.|||||    ||.|.|.|.|.||     .||||||
RBAM_005520__      1 ------------TTGGAAACA----AAACGTGTTTTGG-----CATTCAG     29

BSNT_00380___     51 AAAGTTCAATCGATTTTATACAAACGTCCTTGGTTTCCTTAATGAGCACA    100
                     |.|.||.|||.|||||||||||.|..|..|.||.||.||.|||||.||.|
RBAM_005520__     30 ACAATTTAATAGATTTTATACAGATATTTTAGGCTTTCTAAATGAACATA     79

BSNT_00380___    101 TTTACGACAGCCCGTTTTCCTTAACAGAAACACGGATTTTATTTGAGATT    150
                     ||||.|||||.||.||.||.||||||||||||.|||||||||..||.|||
RBAM_005520__     80 TTTATGACAGTCCATTCTCTTTAACAGAAACAAGGATTTTATACGAAATT    129

BSNT_00380___    151 TATAATACGCCTAATTGTACGGCAAAAGCTC-TTCAGGATAAGCTGGGGC    199
                     |||||||||.|..|||||||.|||||| .|| ||||.|| |||.|..|.|
RBAM_005520__    130 TATAATACGGCCGATTGTACAGCAAAA-ATCATTCAAGA-AAGGTTAGAC    177

BSNT_00380___    200 TTG-ACCGGGGATATGTCAGCAGGATTGT--GAAGCAGTTTGAAATAGAA    246
                     ||| ||.|.||||||||.|||||.||.||  |||  |.||.|||..|.||
RBAM_005520__    178 TTGAACAGAGGATATGTGAGCAGAATCGTCAGAA--AATTCGAAGAAAAA    225

BSNT_00380___    247 GATTTGATCTATAAACAGAGGAGCAAAGATGACGCTCGCCACCATTACAT    296
                     |..||.||.||.||.||.|...|||.|||.||||..|||.|.||||.|.|
RBAM_005520__    226 GGCTTCATATACAAGCAAAAATGCAGAGAAGACGGACGCAATCATTTCCT    275

BSNT_00380___    297 TTTTGTCACAGAAACAGGAAAAACGATTTATAAAAAGCTGGAGGAGAAAG    346
                     ||..||.||.|.|.||||..|||..||||||||||..||||||.|.||||
RBAM_005520__    276 TTACGTAACCGCATCAGGGGAAAGTATTTATAAAAGTCTGGAGAAAAAAG    325

BSNT_00380___    347 CCAACGAACAAGTAGAACTGATGC-TGAAGGAAATCAACCAAAAGGAGCA    395
                     |.||..|.||.||.|||...||.| ||||.| .||..||.||.||||.||
RBAM_005520__    326 CGAATCAGCAGGTTGAATATATCCTTGAACG-CATAGACAAAGAGGAACA    374

BSNT_00380___    396 GCAGAAGCTT-TCCGAGGCGATGGCAGAGATTGAAGAGATCCTTT-CA-C    442
                     ..|.||.||| |.| |..|.||||.|...|||.||.|.||  ||| || |
RBAM_005520__    375 AGAAAAACTTGTAC-ATTCAATGGAAACCATTCAAAACAT--TTTGCAGC    421

BSNT_00380___    443 AGTCGCTTTCTGCCAGAACATCAGAGATATCGATTAGAGATTATTTTCTT    492
                     |.||..|||.||..|.|..|||...|||.||.||.|||||.||||.|..|
RBAM_005520__    422 ATTCTTTTTATGATAAAGAATCTCCGATTTCAATAAGAGACTATTATACT    471

BSNT_00380___    493 TCGGAGGATATTCAACTCCTTATTGAGAAACAAAGACAATTTTACGCGGA    542
                     ||.||||||.|..||..|.|.|||||||||||..||..||||||.||.||
RBAM_005520__    472 TCAGAGGATGTCAAAAACATAATTGAGAAACAGCGATTATTTTATGCCGA    521

BSNT_00380___    543 GGCTCACGGTTGGGATGACACGTTTTTAGCTTATCTTCAGGAGACATTTG    592
                     ..|.||.||.||||||||.||.||||||.|.||||||||.||.||.|||.
RBAM_005520__    522 ATCCCATGGCTGGGATGATACATTTTTATCCTATCTTCACGATACGTTTA    571

BSNT_00380___    593 ACGCTGACATCGAAAAAATATGGATTGCGGAAAGCGGCGGGA---AATTT    639
                     |.|||||.||..|||||||||||.|.||.||||   ||||||   |||||
RBAM_005520__    572 AAGCTGATATTAAAAAAATATGGGTGGCAGAAA---GCGGGAATCAATTT    618

BSNT_00380___    640 GCCGGCTCTGTCGGGTTGGTCAAGCACGATGAAAAGACAGTCCAGCTCAG    689
                     ||.||.|.|.||||.||.||.||..||||||||||.||||..|||.|.||
RBAM_005520__    619 GCGGGTTGTATCGGCTTAGTGAATGACGATGAAAAAACAGGACAGTTAAG    668

BSNT_00380___    690 ATGGTTTCTGGTTGATGCGGATTTTCGGGGCAGGGGGCTTGGCACGCAAT    739
                     .|||||..|.||.|||.||..|||||...|.|..||..|.|||| ||..|
RBAM_005520__    669 GTGGTTCTTAGTCGATCCGTCTTTTCAAAGAAAAGGTGTCGGCA-GCCGT    717

BSNT_00380___    740 -TGCTGGA-GCATCTGGTTGCATACTGCCAAG-ACATGAAGTTTGACCGC    786
                      ||.|..| ||| ||.|||..|||.||..||| |.|||.| |..||.||.
RBAM_005520__    718 CTGATTAAGGCA-CTTGTTCAATATTGTAAAGAAAATGGA-TACGAGCGT    765

BSNT_00380___    787 ATTTTCCTTTGGACGGT--GAGCACGATGGCTGAGGCTCGTCCGCTCTAT    834
                     ||.||.|||||||||||  ||| || |||.|....||.||.||..|.|||
RBAM_005520__    766 ATATTTCTTTGGACGGTAAGAG-AC-ATGTCAACAGCCCGGCCCTTGTAT    813

BSNT_00380___    835 AAAAAATTTGGATTCAGGATA----AG-------TGAAGTAAAACAAGAA    873
                     ||||||...||||||  ||.|    ||       |||||.||||      
RBAM_005520__    814 AAAAAAAACGGATTC--GAAATTACAGAAATTCATGAAGAAAAA------    855

BSNT_00380___    874 GCGCCATTATGGGGA-CAGCAGCTGACAGAAGAACGGTGGGATTTGGAGC    922
                        ||.||||||||| || .|..|.|.||||||.||.|||||||||||..
RBAM_005520__    856 ---CCTTTATGGGGATCA-AATTTAATAGAAGAGCGCTGGGATTTGGAAT    901

BSNT_00380___    923 TGTCATGA    930
                     |.|.|   
RBAM_005520__    902 TATAA---    906


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00380 and RBAM_005520

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
