Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00780 and RBAM_004880

See DNA alignment / Visit BSNT_00780 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence pep-align/BSNT_00780___ydbO.1.9828.seq
#    -bsequence pep-align/RBAM_004880___ydbO2.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00780___ydbO-RBAM_004880___ydbO2.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00780___ydbO-RBAM_004880___ydbO2.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00780___ydbO
# 2: RBAM_004880___ydbO2
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 296
# Identity:     128/296 (43.2%)
# Similarity:   142/296 (48.0%)
# Gaps:         134/296 (45.3%)
# Score: 666.0
# 
#
#=======================================

BSNT_00780___      1 MERTENLKKGEKGALLNIFAYVILAVVKLVIGILYHSEALRADGLNNGTD     50
                                                                       
RBAM_004880__      0 --------------------------------------------------      0

BSNT_00780___     51 IVASVAVLIGLRISQRPADSDHPYGHYRAETISSLVASFIMMAVGIEVLI    100
                                                                       
RBAM_004880__      0 --------------------------------------------------      0

BSNT_00780___    101 GGGKAIAGGTTETPNLIAAWTALGSAVFMYGIYLYNKRLAASIKSSALMA    150
                                                 |||:|:||.|||..:||:||.|
RBAM_004880__      1 ----------------------------MYGMYVYNSRLADRVKSAALHA     22

BSNT_00780___    151 AAKDSRSDAFVSAGAFIGVFSSQLKLPWIDPVTAFIIGIIICKTAWDIFK    200
                     |||||||||:||.||||||.:::|.|||||||.||:||||||||||||||
RBAM_004880__     23 AAKDSRSDAYVSIGAFIGVLTARLHLPWIDPVIAFLIGIIICKTAWDIFK     72

BSNT_00780___    201 DASHSLTDGFHLKDLEPYKQTVGRIENVHRLKDVKARYLGSTVHIEMVIT    250
                     ||||||||||.||||||||.||..|:.|.|||||||||||||||:|||||
RBAM_004880__     73 DASHSLTDGFDLKDLEPYKHTVKEIKEVSRLKDVKARYLGSTVHVEMVIT    122

BSNT_00780___    251 VDPKLTVEEGHGVADEVEDKIKHEHDVTHVHVHVEPDDIK------    290
                     |||.|:|:|||.||||||..||||||||||||||||:.|.      
RBAM_004880__    123 VDPGLSVKEGHEVADEVEYAIKHEHDVTHVHVHVEPEVINKDRETN    168


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