Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00780 and RBAM_004880
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_00780___ydbO.1.9828.seq
# -bsequence dna-align/RBAM_004880___ydbO2.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00780___ydbO-RBAM_004880___ydbO2.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00780___ydbO-RBAM_004880___ydbO2.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00780___ydbO
# 2: RBAM_004880___ydbO2
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 897
# Identity: 373/897 (41.6%)
# Similarity: 373/897 (41.6%)
# Gaps: 414/897 (46.2%)
# Score: 1343.0
#
#
#=======================================
BSNT_00780___ 1 ATGGAGCGGACAGAAAATCTGAAAAAGGGAGAAAAAGGGGCGCTCCTCAA 50
RBAM_004880__ 0 -------------------------------------------------- 0
BSNT_00780___ 51 TATTTTTGCATATGTCATTCTTGCTGTTGTAAAGCTAGTCATCGGGATTC 100
RBAM_004880__ 0 -------------------------------------------------- 0
BSNT_00780___ 101 TATATCATTCTGAAGCGCTGAGAGCAGACGGGTTAAATAATGGAACAGAT 150
RBAM_004880__ 0 -------------------------------------------------- 0
BSNT_00780___ 151 ATTGTTGCGTCAGTAGCAGTGCTGATAGGATTGCGGATTTCTCAAAGACC 200
RBAM_004880__ 0 -------------------------------------------------- 0
BSNT_00780___ 201 GGCTGACAGCGATCATCCATACGGCCATTATCGGGCTGAAACAATTTCGT 250
RBAM_004880__ 0 -------------------------------------------------- 0
BSNT_00780___ 251 CTCTTGTTGCGTCTTTTATTATGATGGCAGTCGGCATTGAAGTGTTAATC 300
RBAM_004880__ 0 -------------------------------------------------- 0
BSNT_00780___ 301 GGCGGAGGAAAAGCGATTGCGGGCGGCACAACGGAAACGCCAAATCTTAT 350
RBAM_004880__ 0 -------------------------------------------------- 0
BSNT_00780___ 351 CGCGGCATGGACGGCGTTAGGCAGTGCTGTGTTTATGTATGGCATCTATT 400
|||||.|||||.|||.
RBAM_004880__ 1 ----------------------------------ATGTACGGCATGTATG 16
BSNT_00780___ 401 TATATAACAAAAGGCTGGCAG--CGTCCATTAAAAGCTCTGC-CCTGATG 447
|||||||||...|.||.|||| || ..|||||||..|||| |.|.||
RBAM_004880__ 17 TATATAACAGCCGTCTTGCAGATCG--GGTTAAAAGTGCTGCGCTTCAT- 63
BSNT_00780___ 448 GCAGCGGCAAAGGACAGCAGGTCAGACGCTTTTGTAAGTGCCGGCGCGTT 497
||.|||||.||.||||||.|.||.|||||.|.|||.|||...||.|||||
RBAM_004880__ 64 GCGGCGGCGAAAGACAGCCGTTCTGACGCCTATGTCAGTATTGGGGCGTT 113
BSNT_00780___ 498 TATCGGTGTTTTTTCGTCCCAGCTGAAGCTGCCGTGGATTGATCCGGTAA 547
|||.||.||.||..|..|||.|||..|.||||||||||||||||||||.|
RBAM_004880__ 114 TATAGGCGTCTTAACCGCCCGGCTTCATCTGCCGTGGATTGATCCGGTCA 163
BSNT_00780___ 548 CGGCTTTTATCATCGGCATCATCATTTGCAAAACTGCGTGGGATATCTTT 597
..||||||.|.|||||.||||||||.||.||.||.||.|||||.|||||.
RBAM_004880__ 164 TTGCTTTTCTGATCGGAATCATCATCTGTAAGACGGCATGGGACATCTTC 213
BSNT_00780___ 598 AAAGACGCTTCACATTCCTTAACAGACGGCTTCCATTTAAAAGATCTTGA 647
|||||.|||||.||.||.||.||.|||||.||..||.|.||||||.|.||
RBAM_004880__ 214 AAAGATGCTTCCCACTCATTGACGGACGGGTTTGATCTGAAAGATTTGGA 263
BSNT_00780___ 648 GCCTTACAAACAGACCGTCGGCAGGATTGAAA-ATGT--GCATCGCCTAA 694
|||.||.|||||.||.|| |..||.|.|.||| |.|| ||| |.||.|
RBAM_004880__ 264 GCCGTATAAACACACGGT-GAAAGAAATAAAAGAGGTCAGCA--GGCTGA 310
BSNT_00780___ 695 AGGATGTGAAAGCGAGGTATTTAGGCAGTACAGTTCATATCGAGATGGTG 744
|||||||||||||.|||||||||||.||.||.||||||.|.||.|||||.
RBAM_004880__ 311 AGGATGTGAAAGCAAGGTATTTAGGGAGCACGGTTCATGTGGAAATGGTC 360
BSNT_00780___ 745 ATTACGGTTGATCCGAAGCTTACAGTAGAAGAAGGCCATGGAGTGGCGGA 794
||||||||.||||||...||..|.||..||||||||||||.|||.||.||
RBAM_004880__ 361 ATTACGGTAGATCCGGGACTGTCTGTGAAAGAAGGCCATGAAGTAGCCGA 410
BSNT_00780___ 795 TGAAGTAGAAGACAAAATAAAACATGAACACGATGTCACTCATGTTCATG 844
|||.||.|||.|...|||||||||||||||.|||||.||||||||.||||
RBAM_004880__ 411 TGAGGTCGAATATGCAATAAAACATGAACATGATGTGACTCATGTCCATG 460
BSNT_00780___ 845 TTCATGTAGAGCCCGACGACATAAAATAA------------------ 873
|||||||||||||.||.|.||||||..||
RBAM_004880__ 461 TTCATGTAGAGCCTGAAGTCATAAACAAAGATCGTGAAACGAATTAA 507
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