Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00770 and RBAM_004820

See DNA alignment / Visit BSNT_00770 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence pep-align/BSNT_00770___ydbJ.1.9828.seq
#    -bsequence pep-align/RBAM_004820___ydbJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00770___ydbJ-RBAM_004820___ydbJ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00770___ydbJ-RBAM_004820___ydbJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00770___ydbJ
# 2: RBAM_004820___ydbJ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 308
# Identity:     235/308 (76.3%)
# Similarity:   268/308 (87.0%)
# Gaps:           0/308 ( 0.0%)
# Score: 1238.0
# 
#
#=======================================

BSNT_00770___      1 MAEPILHIEGLDKKIGSKQILKQISMDVMEGEIIGLLGPNGSGKTTLIRI     50
                     |.|||||||||||.||.|.|||.|||||.:||||||||||||||||||||
RBAM_004820__      1 MTEPILHIEGLDKTIGKKHILKNISMDVRQGEIIGLLGPNGSGKTTLIRI     50

BSNT_00770___     51 IVGLLKQNSGSVTISGFQHDTEFEKAMEAVGAIVENPEFYPYLTGWENLK    100
                     ||||||:|||::||:|||||.:||||:|:|||||||||||||||||||||
RBAM_004820__     51 IVGLLKKNSGTITINGFQHDADFEKALESVGAIVENPEFYPYLTGWENLK    100

BSNT_00770___    101 HFANMHKKIADERLDEVVERVGLTSAIHDKVKTYSLGMRQRLGIAQAILH    150
                     |||||||.|.::||.||:||||||:|:|||||||||||||||||||||||
RBAM_004820__    101 HFANMHKNIKEDRLQEVIERVGLTNAVHDKVKTYSLGMRQRLGIAQAILH    150

BSNT_00770___    151 RPKLLILDEPTNGLDPAGMKDFRDHIKELAEMEGTAVLFATHLLREVEDL    200
                     ||.|||||||||||||.||||||||:|||||:|||::|||||||||||||
RBAM_004820__    151 RPNLLILDEPTNGLDPGGMKDFRDHLKELAELEGTSILFATHLLREVEDL    200

BSNT_00770___    201 CDRVIIIQKGEIKAEVSLQGTGQTTEKAIIEVQPQEKALNWLTGNQYQAE    250
                     |||||||||||||.||.|:|..:..|||::::||.::|..||:..|:..|
RBAM_004820__    201 CDRVIIIQKGEIKTEVVLRGAEEKEEKAVLDIQPADEAFEWLSQQQFAPE    250

BSNT_00770___    251 SQDGTIVVEVAKENIPELNRSLVGQDLNVFSITPYTQSLEDEFIKATTAH    300
                     ...|.|.|.|||::||.|||:|||||..|:||.||.:||||||:|.|||.
RBAM_004820__    251 KNGGGITVTVAKKDIPALNRALVGQDFLVYSIMPYAESLEDEFMKVTTAL    300

BSNT_00770___    301 QEEGEELV    308
                     |||||..|
RBAM_004820__    301 QEEGETNV    308


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