Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00770 and RBAM_004820
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_00770___ydbJ.1.9828.seq
# -bsequence dna-align/RBAM_004820___ydbJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00770___ydbJ-RBAM_004820___ydbJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00770___ydbJ-RBAM_004820___ydbJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00770___ydbJ
# 2: RBAM_004820___ydbJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 969
# Identity: 710/969 (73.3%)
# Similarity: 710/969 (73.3%)
# Gaps: 84/969 ( 8.7%)
# Score: 2513.5
#
#
#=======================================
BSNT_00770___ 1 ATGGCTGAGCCGATTTTACATATTGAAGGCCTCGATAAAAAGATTGGGTC 50
|||.||||||||||||||||||||||||||||.||.||||..||.|| |
RBAM_004820__ 1 ATGACTGAGCCGATTTTACATATTGAAGGCCTTGACAAAACAATAGG--C 48
BSNT_00770___ 51 TAAA--CAGATTTTAAAACAGATCAGCATGGATGTCATGGAGGGTGAAAT 98
.||| ||.|||||||||.|.||||||||||||||||.|.||||.||.||
RBAM_004820__ 49 AAAAAGCACATTTTAAAAAACATCAGCATGGATGTCAGGCAGGGCGAGAT 98
BSNT_00770___ 99 CATCGGCCTACTCGGTCCGAATGGTTCCGGAAAAACAACACTCATCCGTA 148
||||||..|.|||||||||||.||.||.||||||||.|||||.|||||.|
RBAM_004820__ 99 CATCGGTTTGCTCGGTCCGAACGGGTCGGGAAAAACCACACTTATCCGAA 148
BSNT_00770___ 149 TCATCGTCGGGCTGCTGAAACAAAACAGCGGAAGCG-TGACAATCAGCGG 197
||||||||||.||..|.||..||||||||||.| || |.|||||.|.|||
RBAM_004820__ 149 TCATCGTCGGTCTTTTAAAGAAAAACAGCGGCA-CGATTACAATTAACGG 197
BSNT_00770___ 198 ATTCCAGCATGATACAGAGTTTGAAAAAGCGATGGAAGCGGTTGGAGCGA 247
.||.|||||.|||.|.||.||.|||||||||.|.|||.|.||.|||||||
RBAM_004820__ 198 CTTTCAGCACGATGCTGATTTCGAAAAAGCGCTTGAATCCGTCGGAGCGA 247
BSNT_00770___ 248 TTGTTGAGAACCCTGAGTTCTATCCGTACCTGACAGGCTGGGAAAACCTC 297
|.||.||.||.|||||.|||||.|||||||||||.||.|||||.||.||.
RBAM_004820__ 248 TCGTGGAAAATCCTGAATTCTACCCGTACCTGACGGGGTGGGAGAATCTG 297
BSNT_00770___ 298 AAGCACTTTGCGAATATGCACAAAAAAAT---AGCGGATGAAC-GGCTTG 343
|||||||||||.||.|||||||||||.|| ||.|| || |||||.
RBAM_004820__ 298 AAGCACTTTGCCAACATGCACAAAAACATCAAAGAGG----ACAGGCTTC 343
BSNT_00770___ 344 ATGAAGTGGTGGAACGTGTCGGGCTGACGTCA--GCGATTCATGATAAGG 391
|.|||||..|.|||||.||||||||.|| || ||..|||||||.||.|
RBAM_004820__ 344 AGGAAGTCATCGAACGGGTCGGGCTCAC--CAATGCCGTTCATGACAAAG 391
BSNT_00770___ 392 TAAAAACCTATTCCCTTGGGATGCGCCAGCGTCTGGGGATCGCCCAGGCA 441
|.|||||.|||||||||||.|||||.||||||||.|||||.||.|||||.
RBAM_004820__ 392 TTAAAACGTATTCCCTTGGTATGCGTCAGCGTCTCGGGATTGCTCAGGCC 441
BSNT_00770___ 442 ATTCTTCACCGGCCGAAGCTCCTCATTCTAGATGAACCGACAAACGGCCT 491
|||||||||||.|||||.||.||||||.|||||||||||||||||||.||
RBAM_004820__ 442 ATTCTTCACCGTCCGAATCTGCTCATTTTAGATGAACCGACAAACGGGCT 491
BSNT_00770___ 492 AGACCCTGCGGGGATGAAGGATTTTCGCGATCATATTAAA-GAGCTCGCA 540
.||.||.|.|||.|||||||||||.|||||||| .||||| ||.|||||.
RBAM_004820__ 492 TGATCCCGGGGGAATGAAGGATTTCCGCGATCA-CTTAAAGGAACTCGCG 540
BSNT_00770___ 541 GAAATGGAAGGAAC-AGCTGTCCTGTTCGCCACTCATTTATTGCGCGAGG 589
||..|.|||||.|| ||| .||||.||.||.||.|||||||||||.||.|
RBAM_004820__ 541 GAGCTTGAAGGGACGAGC-ATCCTTTTTGCGACGCATTTATTGCGTGAAG 589
BSNT_00770___ 590 TTGAAGACTTGTGCGACCGTGTCATTATCATTCAAAAAGGTGAGATCAAA 639
|.||.|||.|.||||||||||||||.||||||||||||||||||||||||
RBAM_004820__ 590 TGGAGGACCTTTGCGACCGTGTCATCATCATTCAAAAAGGTGAGATCAAA 639
BSNT_00770___ 640 GCGGAAGT------------CAGCTTACAAGGAACTGGCCAAACCACAGA 677
.|.||.|| | ||| .||||| ||| ..|||
RBAM_004820__ 640 ACAGAGGTTGTTCTGCGCGGC-GCT---GAGGAA------AAA--GAAGA 677
BSNT_00770___ 678 AAAAGCGATTATAGAAGTGCAGCCGCAAGAAAAAGCGCTCAATTGGCTG- 726
||||||..|..|.||..|.||||||...||..||||..||.|.||||||
RBAM_004820__ 678 AAAAGCCGTCCTCGACATTCAGCCGGCTGACGAAGCCTTCGAATGGCTGT 727
BSNT_00770___ 727 ----ACAGGCAATCAATATCAAGCT---GAGAGCCAAGACGGGACG---- 765
|||| ||||.| ||| |||| ||.|||| ||
RBAM_004820__ 728 CCCAACAG-----CAATTT---GCTCCGGAGA---AAAACGG--CGGGGG 764
BSNT_00770___ 766 -ATTGTAGTTGAGGTGGCAAAAGAA-AACATACCGGAGCTGAACCGATCA 813
|||...||....||.|| .||||| .||||.||||...|.|||||..|.
RBAM_004820__ 765 CATTACCGTCACCGTAGC-GAAGAAGGACATCCCGGCATTAAACCGTGCG 813
BSNT_00770___ 814 CTTGTCGGACAAGA---TCTGAATGTATTTTCCATTACGCCTTACACGCA 860
||.||||||||||| ||| |||.|.||||||.|.|||.||..||.|
RBAM_004820__ 814 CTCGTCGGACAAGACTTTCT---TGTGTATTCCATCATGCCGTATGCGGA 860
BSNT_00770___ 861 GTCACTGGAAGACGAATTTATAAAAGCGACAACAGCTCATCAAGAGGA-- 908
.||.|||||.||.|||||.||.||||.|||.||.||.|.|||||||||
RBAM_004820__ 861 ATCGCTGGAGGATGAATTCATGAAAGTGACGACGGCGCTTCAAGAGGAGG 910
BSNT_00770___ 909 GGGAGAAGAGCTTGTCTAA 927
||||||.|| .|||.|||
RBAM_004820__ 911 GGGAGACGA--ATGTTTAA 927
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