Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_03473 and RBAM_004580

See DNA alignment / Visit BSNT_03473 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:25:42
# Commandline: needle
#    -asequence pep-align/BSNT_03473___ypzD.1.9828.seq
#    -bsequence pep-align/RBAM_004580___ypzD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_03473___ypzD-RBAM_004580___ypzD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_03473___ypzD-RBAM_004580___ypzD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03473___ypzD
# 2: RBAM_004580___ypzD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 70
# Identity:      49/70 (70.0%)
# Similarity:    58/70 (82.9%)
# Gaps:           0/70 ( 0.0%)
# Score: 257.0
# 
#
#=======================================

BSNT_03473___      1 MIDYPININNVSGNSVINVGGAFMIRPLTLSKSVFGSGGLNTGIVFENNF     50
                     |:|.||.|||::||.|||||||..|.|:|.||:||||||||||||.:||.
RBAM_004580__      1 MMDSPIKINNLTGNGVINVGGALTITPITASKTVFGSGGLNTGIVIQNNS     50

BSNT_03473___     51 VSKAKMINHQFTDQNVTKTF     70
                     ||::|||.|||:||.|.|||
RBAM_004580__     51 VSQSKMIGHQFSDQKVIKTF     70


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.