Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00734 and RBAM_004410

See DNA alignment / Visit BSNT_00734 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence pep-align/BSNT_00734___ydaD.1.9828.seq
#    -bsequence pep-align/RBAM_004410___ydaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00734___ydaD-RBAM_004410___ydaD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00734___ydaD-RBAM_004410___ydaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00734___ydaD
# 2: RBAM_004410___ydaD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 296
# Identity:     251/296 (84.8%)
# Similarity:   267/296 (90.2%)
# Gaps:          10/296 ( 3.4%)
# Score: 1327.0
# 
#
#=======================================

BSNT_00734___      1 ----------MANYPKELPAQTQSRQPGIESEMNPSPVYEYEDYKGADKL     40
                               |.|||||.||::|:||||||:||||:|||||::|||||||
RBAM_004410__      1 MRSNKKEELDMENYPKEFPAESQNRQPGIENEMNPAPVYEYKEYKGADKL     50

BSNT_00734___     41 KGKVALITGGDSGIGRAVSVAYAKEGADIAIVYKDEHEDAEETKKRVEQE     90
                     |||.||||||||||||||:||||||||::||||.|||.|||:||||||:|
RBAM_004410__     51 KGKTALITGGDSGIGRAVAVAYAKEGANVAIVYFDEHGDAEDTKKRVEEE    100

BSNT_00734___     91 GVKCLLIAGDVGEEEFCNEAVGKTVKELGGLDILVNNAGEQHPKESIKDI    140
                     |||||||.||||||:||||||.|||:|.|.||||||||.|||||||||||
RBAM_004410__    101 GVKCLLIPGDVGEEDFCNEAVEKTVEEFGRLDILVNNAAEQHPKESIKDI    150

BSNT_00734___    141 TSEQLHRTFKTNFYSQFYLTKKAIDYLKPGSAIINTTSINPYVGNPTLID    190
                     ||||||||||||||||||||||||||:|||||||||||||||.|||.|||
RBAM_004410__    151 TSEQLHRTFKTNFYSQFYLTKKAIDYMKPGSAIINTTSINPYTGNPQLID    200

BSNT_00734___    191 YTATKGAINAFTRTMAQALVKDGIRVNAVAPGPIWTPLIPATFPEETVAQ    240
                     |||||||||.|||:||||||.||||||||||||||||||||||.|||||.
RBAM_004410__    201 YTATKGAINGFTRSMAQALVNDGIRVNAVAPGPIWTPLIPATFSEETVAS    250

BSNT_00734___    241 FGQDTPMGRPGQPVEHVGCYVLLASDESSYMTGQTLHVNGGNFVTT    286
                     |||.|||||.|||||||||||||||||||||||||||||||.||||
RBAM_004410__    251 FGQTTPMGRAGQPVEHVGCYVLLASDESSYMTGQTLHVNGGKFVTT    296


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