Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00734 and RBAM_004410

See Amino acid alignment / Visit BSNT_00734 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:30
# Commandline: needle
#    -asequence dna-align/BSNT_00734___ydaD.1.9828.seq
#    -bsequence dna-align/RBAM_004410___ydaD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00734___ydaD-RBAM_004410___ydaD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00734___ydaD-RBAM_004410___ydaD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00734___ydaD
# 2: RBAM_004410___ydaD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 893
# Identity:     679/893 (76.0%)
# Similarity:   679/893 (76.0%)
# Gaps:          34/893 ( 3.8%)
# Score: 2635.0
# 
#
#=======================================

BSNT_00734___      1 ------------------------------ATGGCAAATTATCCAAAAGA     20
                                                   ||||.|||.|||||.||.||
RBAM_004410__      1 ATGAGATCGAACAAGAAGGAGGAACTTGACATGGAAAACTATCCGAAGGA     50

BSNT_00734___     21 ACTGCCGGCACAAACTCAAAGTCGCCAGCCGGGAATTGAAAGCGAAATGA     70
                     |.|.|||||..||.|.||||..|||||||||||.|||||.|.||||||||
RBAM_004410__     51 ATTCCCGGCGGAATCACAAAACCGCCAGCCGGGCATTGAGAACGAAATGA    100

BSNT_00734___     71 ATCCAAGTCCGGTGTATGAGTACGAGGATTATAAAGGAGCAGACAAATTA    120
                     ||||....||.||.|||||.|||.|.||.||||||||.||.||.||||||
RBAM_004410__    101 ATCCGGCGCCTGTTTATGAATACAAAGAATATAAAGGCGCTGATAAATTA    150

BSNT_00734___    121 AAAGGAAAAGTAGCTCTTATTACAGGCGGCGACAGCGGGATCGGACGCGC    170
                     |||||.|||...||.|||||.|||||.|||||||||||.|||||||||||
RBAM_004410__    151 AAAGGGAAAACCGCACTTATCACAGGGGGCGACAGCGGTATCGGACGCGC    200

BSNT_00734___    171 GGTTTCCGTCGCTTACGCAAAGGAAGGCGCGGACATCGCCATTGTGTATA    220
                     .||..|.||.||||||||.|||||||||||..|..||||.||.||.|||.
RBAM_004410__    201 CGTAGCGGTTGCTTACGCGAAGGAAGGCGCAAATGTCGCGATCGTCTATT    250

BSNT_00734___    221 AGGATGAGCATGAAGACGCTGAGGAGACGAAGAAACGTGTTGAACAAGAA    270
                     ..|||||.||.|..||.||.||.||.||.||.|||||.||.|||.|||||
RBAM_004410__    251 TTGATGAACACGGTGATGCGGAAGATACAAAAAAACGAGTGGAAGAAGAA    300

BSNT_00734___    271 GGCGTAAAATGCCTGCTGATTGCTGGTGACGTAGGTGAAGAGGAATTCTG    320
                     |||||||||||.|||.|.||..|.||.||.||.|||||.||.||.||.||
RBAM_004410__    301 GGCGTAAAATGTCTGTTAATCCCCGGCGATGTCGGTGAGGAAGACTTTTG    350

BSNT_00734___    321 CAATGAAGCGGTTGGAAAAACGGTCAAGGAACTAGGCGGCCTTGACATCC    370
                     ||||||||||||||.|||||||||..|.|||.|.||..|.|||||.||.|
RBAM_004410__    351 CAATGAAGCGGTTGAAAAAACGGTTGAAGAATTCGGGCGTCTTGATATTC    400

BSNT_00734___    371 TTGTCAACAATGCAGGTGAACAGCATCCGAAGGAAAGCATCAAAGATATT    420
                     |.||.||.||.||.|..||||||||||||||.||||||||.|||||.||.
RBAM_004410__    401 TCGTGAATAACGCCGCGGAACAGCATCCGAAAGAAAGCATTAAAGACATC    450

BSNT_00734___    421 ACGAGCGAACAGCTTCACCGCACATTCAAAACAAATTTTTATTCTCAATT    470
                     ||.|||||.|||||||||.|.||.||.||||||||.|||||.||.|||||
RBAM_004410__    451 ACAAGCGAGCAGCTTCACAGAACCTTTAAAACAAACTTTTACTCACAATT    500

BSNT_00734___    471 TTATTTGACTAAAAAAGCAATTGATTACCTGAAACCGGGCAGCGCCATCA    520
                     ||||||||||||||||||.|||||||||.||||.|||||||||||.||||
RBAM_004410__    501 TTATTTGACTAAAAAAGCGATTGATTACATGAAGCCGGGCAGCGCGATCA    550

BSNT_00734___    521 TCAATACGACATCCATCAACCCGTACGTAGGGAACCCGACA-CTGATTGA    569
                     ||||||||||||||||.||.||.|||..|||.||.||| || ||||||||
RBAM_004410__    551 TCAATACGACATCCATTAATCCTTACACAGGCAATCCG-CAGCTGATTGA    599

BSNT_00734___    570 TTATACAGCGACAAAAGGGGCGATCAATGCCTTTACAAGAACAATGGCGC    619
                     .||.||.||.||||||||.|||||.||.|..|||||.|||.|.|||||||
RBAM_004410__    600 CTACACGGCTACAAAAGGCGCGATTAACGGTTTTACGAGATCCATGGCGC    649

BSNT_00734___    620 AGGCGCTTGTCAAAGACGGCATCCGTGTAAATGCAGTCGCGCCGGGTCCA    669
                     |.|||||.|||||.|||||.||||||||.||.||.||.||.|||||.||.
RBAM_004410__    650 AAGCGCTCGTCAACGACGGTATCCGTGTCAACGCCGTGGCACCGGGGCCG    699

BSNT_00734___    670 ATTTGGACGCCACTAATCCCAGCTACGTTCCCTGAAGAAACAGTTGCTCA    719
                     ||.|||||.||.||.||.||.||.||.|||.|.|||||||||||.|||..
RBAM_004410__    700 ATCTGGACACCGCTCATTCCGGCGACATTCTCAGAAGAAACAGTCGCTTC    749

BSNT_00734___    720 ATTTGGGCAAGA-TACGCCGATGGGCCGTCCTGGACAGCCTGTTGAGCAC    768
                     .||.||.| ||| ||||||||||||.||..|.||.||||||||||||||.
RBAM_004410__    750 CTTCGGTC-AGACTACGCCGATGGGGCGGGCAGGCCAGCCTGTTGAGCAT    798

BSNT_00734___    769 GTCGGCTGTTATGTGCTTCTGGCATCAGATGAGTCCTCTTACATGACAGG    818
                     ||||||||.||||||||..||||.|||||.||.||.|||||.|||||.||
RBAM_004410__    799 GTCGGCTGCTATGTGCTCTTGGCCTCAGACGAATCATCTTATATGACCGG    848

BSNT_00734___    819 TCAGACCCTGCATGTCAACGGCGGAAACTTTGTGACGACATAA    861
                     .|||||.|||||||||||||||||.||.|||||.||.||||||
RBAM_004410__    849 ACAGACGCTGCATGTCAACGGCGGCAAATTTGTAACCACATAA    891


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00734 and RBAM_004410

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
