Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

Amino acid alignment: BSNT_00719 and RBAM_004340

See DNA alignment / Visit BSNT_00719 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:29
# Commandline: needle
#    -asequence pep-align/BSNT_00719___ycsK.1.9828.seq
#    -bsequence pep-align/RBAM_004340___ycsK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00719___ycsK-RBAM_004340___ycsK.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00719___ycsK-RBAM_004340___ycsK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00719___ycsK
# 2: RBAM_004340___ycsK
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 213
# Identity:     150/213 (70.4%)
# Similarity:   174/213 (81.7%)
# Gaps:           0/213 ( 0.0%)
# Score: 778.0
# 
#
#=======================================

BSNT_00719___      1 MMLRYTALGDSLTTGRGSGLFSPGFVQRFGDMMEADLKTRTAINIFARSG     50
                     |.|.|||||||||||||||.||.|||||||.||..||:|||.:::||:||
RBAM_004340__      1 MGLVYTALGDSLTTGRGSGPFSAGFVQRFGRMMAEDLQTRTDVSVFAKSG     50

BSNT_00719___     51 LNTEEILGLLSYPYVQKCIRDADMITITGCGNDLIDSVLAYQTSKDETIF    100
                     |.|.|||||:|.||:|:.|:.|||||||||||||||||.|||.:.|.::|
RBAM_004340__     51 LETGEILGLMSLPYIQRRIQAADMITITGCGNDLIDSVQAYQQTSDASVF    100

BSNT_00719___    101 SRVSAHCHENFEKMIAKVAEIKGENPSPYAIRVFNLYNPFPEIDIAGKWI    150
                     :.||:||||||||||||:|.:||.:||||.|||||||||||.|.||.|||
RBAM_004340__    101 TGVSSHCHENFEKMIAKIAALKGPHPSPYEIRVFNLYNPFPGISIAEKWI    150

BSNT_00719___    151 TSFNSHLETLASAPHVKIADAYSIFKGKEQEYLSFDGVHPNSKGYQAMAE    200
                     :|:|:||.||||||||||||.:|.||||..||||.|.||||||||:.||.
RBAM_004340__    151 SSYNAHLSTLASAPHVKIADVHSAFKGKMNEYLSHDRVHPNSKGYEVMAC    200

BSNT_00719___    201 AVHKLGYKELSVS    213
                     .:..|||..|:.|
RBAM_004340__    201 VLRGLGYGSLARS    213


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.