Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00719 and RBAM_004340
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:29
# Commandline: needle
# -asequence dna-align/BSNT_00719___ycsK.1.9828.seq
# -bsequence dna-align/RBAM_004340___ycsK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00719___ycsK-RBAM_004340___ycsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00719___ycsK-RBAM_004340___ycsK.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00719___ycsK
# 2: RBAM_004340___ycsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 682
# Identity: 442/682 (64.8%)
# Similarity: 442/682 (64.8%)
# Gaps: 80/682 (11.7%)
# Score: 1370.0
#
#
#=======================================
BSNT_00719___ 1 ATGATG---CTTCGATATACAGCTCTGGGCGATTCCTTGACGACAGGGAG 47
||| |||...|||||.||.|||||.|||||.||||||||.|||||
RBAM_004340__ 1 ---ATGGGACTTGTTTATACGGCGCTGGGGGATTCTTTGACGACGGGGAG 47
BSNT_00719___ 48 AGGCTCCGGGCTGTTTTCACCCGGCTTCGTCCAGCGTTTTGGGGACATGA 97
.||.|||||||.||||||..||||.||.||||||||.||.|||...||||
RBAM_004340__ 48 GGGATCCGGGCCGTTTTCCGCCGGTTTTGTCCAGCGGTTCGGGCGTATGA 97
BSNT_00719___ 98 TGGAAGCTGACTTGAAAACAAGAACGGCAATAAACATATTTGCCAGATCA 147
|||.||..||.||..|.||||||||.|...||..|.|.|||||||.||||
RBAM_004340__ 98 TGGCAGAAGATTTACAGACAAGAACCGACGTATCCGTCTTTGCCAAATCA 147
BSNT_00719___ 148 GGTCTGAATACAGAAGAGATTTTGGGACTCCTGTCATATCCCTATGTGCA 197
||.||..|.||.|.|||.|||.|.||.||..||||.|..||.||..|.||
RBAM_004340__ 148 GGCCTTGAGACGGGAGAAATTCTCGGGCTTATGTCCTTGCCGTACATTCA 197
BSNT_00719___ 198 AAAATGTATTCGAGATGCTGATATGATAACGATCACAGGGTGCGGAAACG 247
.|...|.||||..|.||||||||||||.|||||.|||||.|||||.||||
RBAM_004340__ 198 GAGGCGGATTCAGGCTGCTGATATGATTACGATTACAGGCTGCGGCAACG 247
BSNT_00719___ 248 ATCTCATCGATTCGGT-----CTTAGCCTACCAAACCTCTAAGGATGAAA 292
||.|.||||||||||| |.||.| |.|||||.|| |||.|...
RBAM_004340__ 248 ATTTGATCGATTCGGTTCAGGCATATC--AGCAAACATC---GGACGCTT 292
BSNT_00719___ 293 CGATTTTCAGCCGTGTATCCGCCCATTGCCATGAGAATTTTGAAAAGATG 342
||.|.||||.|.|.||.|||...||.||||||||.||.||||||||||||
RBAM_004340__ 293 CGGTGTTCACCGGCGTGTCCAGTCACTGCCATGAAAACTTTGAAAAGATG 342
BSNT_00719___ 343 ATTGCCAAAGTCGCCGAGATTAAAGGAGAAAATCCTTCCCCGTACGCCAT 392
||||||||..||||.|...|.|||||.....|.||.||.||.||.|..||
RBAM_004340__ 343 ATTGCCAAGATCGCTGCCTTAAAAGGGCCGCACCCGTCTCCTTATGAGAT 392
BSNT_00719___ 393 TCGTGTGTTCAACTTATACAATCCGTTTCCCGAAATTGATATC------G 436
.||.||.||.||.||||||||||| ||||||| |..||| |
RBAM_004340__ 393 CCGCGTCTTTAATTTATACAATCC-TTTCCCG-----GGCATCTCCATTG 436
BSNT_00719___ 437 CCGGCAAATGGATCACTTCGTTTAATTCACA-TTTAGAAACACTTGCATC 485
|.|..||||||||..|.||.|.||||.|.|| .|.|| .|||||.|||||
RBAM_004340__ 437 CAGAAAAATGGATATCCTCTTATAATGCGCACCTCAG-CACACTCGCATC 485
BSNT_00719___ 486 AGCACCCCATGTCAAAATCGCGGATGCCTATAGCATCTTCAAAGGCAAA- 534
.||.||.||.||||||||.||.||.|.|.|.|||...||||||||.|||
RBAM_004340__ 486 GGCGCCGCACGTCAAAATTGCCGACGTCCACAGCGCTTTCAAAGGAAAAA 535
BSNT_00719___ 535 -GAACAGGAATATCTGTCCTTTGACGGTGTCCATCCGAACAGCAAAGGCT 583
|| |.||||||||.||...||||.|.||.||.||.||||||||.||.|
RBAM_004340__ 536 TGA--ATGAATATCTCTCTCATGACCGCGTACACCCCAACAGCAAGGGGT 583
BSNT_00719___ 584 ATCAAGCGATGGC-TGAAGCCGTTC---------------AC--AAG-CT 614
||.|||..||||| || |||.| || ||| ||
RBAM_004340__ 584 ATGAAGTCATGGCATG----CGTCCTGCGGGGGCTCGGATACGGAAGCCT 629
BSNT_00719___ 615 AG---GCT-ATAAAGAATTATCAGTTTCATAG 642
.| ||| ||||
RBAM_004340__ 630 CGCCCGCTCATAA------------------- 642
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