Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00714 and RBAM_004300

See DNA alignment / Visit BSNT_00714 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence pep-align/BSNT_00714___ycsI.1.9828.seq
#    -bsequence pep-align/RBAM_004300___ycsI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00714___ycsI-RBAM_004300___ycsI.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00714___ycsI-RBAM_004300___ycsI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00714___ycsI
# 2: RBAM_004300___ycsI
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 264
# Identity:     207/264 (78.4%)
# Similarity:   238/264 (90.2%)
# Gaps:           1/264 ( 0.4%)
# Score: 1134.0
# 
#
#=======================================

BSNT_00714___      1 -MEQLNKMAPKDVRALIREGKINGPTAGMSGGYAQANLVVLKKDLAFDFL     49
                      ...::.|:|::||.|:|:|::.||||||:..|||||||||:||||||||
RBAM_004300__      1 MKNHMSDMSPEEVRQLVRKGQMTGPTAGMAASYAQANLVVLQKDLAFDFL     50

BSNT_00714___     50 LFCQRNQKPCPVLDVTEAGSPVPSLAAPDADIRTDFPKYRIYRHGILTEE     99
                     ||||||||||||||||:||||||::|||.||||||||||||||||:||||
RBAM_004300__     51 LFCQRNQKPCPVLDVTDAGSPVPAIAAPGADIRTDFPKYRIYRHGVLTEE    100

BSNT_00714___    100 VSDITPYWEDDFVGFLIGCSFSFEQALINNGIAVRHIDEGTNVSMYKTNI    149
                     |:||||||:||.|||||||||||||||||..|.:||||||.||.||||:|
RBAM_004300__    101 VTDITPYWKDDDVGFLIGCSFSFEQALINQHIPIRHIDEGVNVPMYKTDI    150

BSNT_00714___    150 DCVPAGAFHGQMVVSMRPVPERLAVRAAQVTSRFPAVHGGPIHIGNPGAI    199
                     ||||||.|.|:|||||||:||||||||||||||||||||.|:.||||.:|
RBAM_004300__    151 DCVPAGPFSGKMVVSMRPIPERLAVRAAQVTSRFPAVHGAPVRIGNPQSI    200

BSNT_00714___    200 GIRDLGKPDFGDAVSIRDGEVPVFWACGVTPQAVAMNVKPEMVITHAPGH    249
                     ||.||.:|||||||::|:||||||||||||||||.|..||::||||:|||
RBAM_004300__    201 GISDLHQPDFGDAVTVREGEVPVFWACGVTPQAVIMEAKPDIVITHSPGH    250

BSNT_00714___    250 MLITDIRDESLAVL    263
                     |||||||:||||||
RBAM_004300__    251 MLITDIRNESLAVL    264


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