Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00714 and RBAM_004300

See Amino acid alignment / Visit BSNT_00714 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_00714___ycsI.1.9828.seq
#    -bsequence dna-align/RBAM_004300___ycsI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00714___ycsI-RBAM_004300___ycsI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00714___ycsI-RBAM_004300___ycsI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00714___ycsI
# 2: RBAM_004300___ycsI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 814
# Identity:     587/814 (72.1%)
# Similarity:   587/814 (72.1%)
# Gaps:          41/814 ( 5.0%)
# Score: 2039.5
# 
#
#=======================================

BSNT_00714___      1 GTGGAGCAATTAAACAAAATG----------GCGCCAAAGGATGT---AC     37
                         |..||  ||||.|.|||          ||.||.|| ||.||   ||
RBAM_004300__      1 ----ATGAA--AAACCATATGAGTGACATGAGCCCCGAA-GAAGTCAGAC     43

BSNT_00714___     38 -GCGCCCTGAT-ACGAGAGGGGAAAATAAACGGGCCGACCGCAGGCATGT     85
                      |    |||.| |.|| |||||.|.||.|.|||||||||.||.||.|||.
RBAM_004300__     44 AG----CTGGTCAGGA-AGGGGCAGATGACCGGGCCGACGGCGGGGATGG     88

BSNT_00714___     86 CCGGCGGC-TACGCCCAAGCGAATCTTGTGGTTTTGAAAAAGGACCTTGC    134
                     || ||..| |||||.|||||.|||||.||.||||||.|||||||.|||||
RBAM_004300__     89 CC-GCTTCTTACGCACAAGCCAATCTCGTCGTTTTGCAAAAGGATCTTGC    137

BSNT_00714___    135 GTTTGATTTTCTGCTGTTTTGCCAGCGAAATCAAAAGCCCTGCCCCGTGC    184
                     .|||||||||||..|.||.||||||||.|||||||||||.||.||.||||
RBAM_004300__    138 CTTTGATTTTCTCTTATTCTGCCAGCGCAATCAAAAGCCTTGTCCGGTGC    187

BSNT_00714___    185 TGGATGTGACTGAAGCAGGTTCGCCTGTGCCGTCTCTGGCTGCGCCTGAT    234
                     |.||.|||||.||.||.|||||.||.||.|||.|..|.||||||||.|..
RBAM_004300__    188 TTGACGTGACGGATGCGGGTTCACCCGTTCCGGCAATAGCTGCGCCGGGA    237

BSNT_00714___    235 GCTGATATCAGAACGGACTTTCCGAAATACCGTATTTACAGGCACGGTAT    284
                     |||||||||.|.||||||||||||||||||.|.|||||..||||.||..|
RBAM_004300__    238 GCTGATATCCGGACGGACTTTCCGAAATACAGGATTTATCGGCATGGCGT    287

BSNT_00714___    285 CCTAACGGAAGAAGTATCTGATATTACGCCATACTGGGAGGACGATTTTG    334
                     .||.||.|||||.|||.|.|||||||||||.||.|||.||||.|||..||
RBAM_004300__    288 GCTTACTGAAGAGGTAACAGATATTACGCCGTATTGGAAGGATGATGATG    337

BSNT_00714___    335 TCGGCTTTCTGATCGGATGCAGTTTCTCCTTTGAACAGGCACTGATCAAT    384
                     ||||.|||.|.|||||.||||||||.||.||.||.||.||.||.||.|||
RBAM_004300__    338 TCGGGTTTTTAATCGGCTGCAGTTTTTCATTCGAGCAAGCCCTTATTAAT    387

BSNT_00714___    385 AATGGGATAGCTGTCCGGCATATTGATGAGGGGACAAACGTCTCAATGTA    434
                     .|....||..|..||.||||.||.||||||||....||.|||.|.|||||
RBAM_004300__    388 CAGCACATTCCAATCAGGCACATCGATGAGGGTGTGAATGTCCCCATGTA    437

BSNT_00714___    435 TAAAACGAATATCGATTGTGTGCCGGCGGGGGCGTTTCACGGACAGATGG    484
                     ||||||..|.||.||.|||||.||.||.||..|||||...|||.||||||
RBAM_004300__    438 TAAAACAGACATTGACTGTGTTCCCGCCGGCCCGTTTTCTGGAAAGATGG    487

BSNT_00714___    485 TTGTCAGCATGAGGCCGGTTCCTGAACGGCTGGCTGTACGTGCCGCACAA    534
                     |.|||||||||||.|||.||||.|||.||||.||.||.||.||.||.||.
RBAM_004300__    488 TCGTCAGCATGAGACCGATTCCGGAAAGGCTTGCAGTCCGCGCGGCGCAG    537

BSNT_00714___    535 GTGACCTCGCGTTTTCCGGCTGTGCACGGAGGGCCGATCCATATCGGCAA    584
                     ||.||.||.||||||||.||.||||||||.|..||..|||..|||||.||
RBAM_004300__    538 GTCACGTCACGTTTTCCCGCCGTGCACGGCGCCCCCGTCCGCATCGGAAA    587

BSNT_00714___    585 TCCGGGAGCA----ATCGGGATTCGCGATCTCGGGA--AACCGGATTTCG    628
                     |||    |||    |||||.||..|||||.|  |.|  |.||||||||||
RBAM_004300__    588 TCC----GCAAAGCATCGGTATCAGCGATTT--GCATCAGCCGGATTTCG    631

BSNT_00714___    629 GAGATGCCGTTTCCATTCGTGACGGCGAGGTTCCTGTTTTTTGGGCATGC    678
                     ||||||||||..|..|.||.||.||.||.|||||.||.||.|||||.|||
RBAM_004300__    632 GAGATGCCGTAACGGTGCGGGAAGGTGAAGTTCCCGTATTCTGGGCTTGC    681

BSNT_00714___    679 GGGGTGACCCCGCAAGCCGTGGCTATGAATGTAAAGCCTGAAATGGTCAT    728
                     ||.||.||.||.||.||.|||...|||.|.|.|||||||||.||.||.||
RBAM_004300__    682 GGCGTTACGCCCCAGGCGGTGATCATGGAAGCAAAGCCTGACATCGTAAT    731

BSNT_00714___    729 CACACATGCGCCGGGGCATATGCTCATCACAGATATTCGAGACGAGTCGC    778
                     .||||||.|.||||||||.|||||.|||||.|||||.|||.|.||.||||
RBAM_004300__    732 AACACATTCACCGGGGCACATGCTGATCACCGATATACGAAATGAATCGC    781

BSNT_00714___    779 TTGCGGTGCTGTAA    792
                     ||||.||.||||||
RBAM_004300__    782 TTGCTGTCCTGTAA    795


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00714 and RBAM_004300

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
