Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00710 and RBAM_004280

See DNA alignment / Visit BSNT_00710 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence pep-align/BSNT_00710___ycsF.1.9828.seq
#    -bsequence pep-align/RBAM_004280___ycsF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00710___ycsF-RBAM_004280___ycsF.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00710___ycsF-RBAM_004280___ycsF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00710___ycsF
# 2: RBAM_004280___ycsF
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 257
# Identity:     199/257 (77.4%)
# Similarity:   230/257 (89.5%)
# Gaps:           3/257 ( 1.2%)
# Score: 1033.0
# 
#
#=======================================

BSNT_00710___      1 MFQIDLNCDLGESFGSYKIGLDQDILEYVTSANIACGFHAGDPSVMRKTV     50
                     |||||:|||||||||:||||||::||:|||||||||||||||||||||||
RBAM_004280__      1 MFQIDINCDLGESFGAYKIGLDEEILDYVTSANIACGFHAGDPSVMRKTV     50

BSNT_00710___     51 ALAAEKGVKIGAHPGLPDLLGFGRRNMAISPEEAYDLVVYQIGALSGFLK    100
                     ||||||||||||||||.||.|||||.:||:|||||||.:|||||||||||
RBAM_004280__     51 ALAAEKGVKIGAHPGLFDLQGFGRRQIAITPEEAYDLTLYQIGALSGFLK    100

BSNT_00710___    101 AEGLHMQHVKPHGALYNMAAVDQKLSDAIAKAVYKIDPGLILFGLAESEL    150
                     |||:.||||||||||||||||:..||:|||:||...|||||||||:.|||
RBAM_004280__    101 AEGVEMQHVKPHGALYNMAAVNPGLSEAIAQAVCHFDPGLILFGLSGSEL    150

BSNT_00710___    151 VKAGERIGLQTANEVFADRTYQSDGTLTPRSQPDALIESDDAAVTQVIKM    200
                     :|||:||||:||:|||||||||.||||||||:|||||:.|..||.|||:|
RBAM_004280__    151 IKAGDRIGLRTASEVFADRTYQEDGTLTPRSEPDALIQDDKKAVGQVIQM    200

BSNT_00710___    201 VKEGAVKSQQGHDVSLKADTVCIHGDGAHALTFAQKIRKQLKAAGIEVTA    250
                     ||:..|.|::|..|||||||||||||||||||||:.|:|:||||.|:::|
RBAM_004280__    201 VKDSTVTSRKGQAVSLKADTVCIHGDGAHALTFAKTIKKELKAADIQISA    250

BSNT_00710___    251 ISEQRST    257
                     :|:.   
RBAM_004280__    251 LSKD---    254


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