Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00710 and RBAM_004280

See Amino acid alignment / Visit BSNT_00710 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence dna-align/BSNT_00710___ycsF.1.9828.seq
#    -bsequence dna-align/RBAM_004280___ycsF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00710___ycsF-RBAM_004280___ycsF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00710___ycsF-RBAM_004280___ycsF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00710___ycsF
# 2: RBAM_004280___ycsF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 790
# Identity:     576/790 (72.9%)
# Similarity:   576/790 (72.9%)
# Gaps:          41/790 ( 5.2%)
# Score: 2040.0
# 
#
#=======================================

BSNT_00710___      1 GTGTTTCAGATTGATTTAAACTGTGATTTAGGAGAAAGCTTCGGATCCTA     50
                     .|||||||||||||..|.||.||||||||||||||.||.|||||..|.||
RBAM_004280__      1 ATGTTTCAGATTGACATCAATTGTGATTTAGGAGAGAGTTTCGGTGCTTA     50

BSNT_00710___     51 CAAGATAGGTCTTGACCAAGATATTTTAGAGTATGTGACATCAGCGAATA    100
                     .||.||.||.||.||..||||.|||||.||.|||||||||||.||.||.|
RBAM_004280__     51 TAAAATCGGGCTGGATGAAGAGATTTTGGATTATGTGACATCTGCAAACA    100

BSNT_00710___    101 TCGCATGCGGATTTCATGCAGGAGATCCTAGTGTTATGCGAAAAACCGTC    150
                     ||||.|||||.||||||||.||.|||||.||.||.|||||.|||||.||.
RBAM_004280__    101 TCGCCTGCGGCTTTCATGCGGGTGATCCCAGCGTGATGCGCAAAACGGTT    150

BSNT_00710___    151 GCGCTTGCAGCGGAAAAAGGCGTAAAAATCGGTGCGCAT-CCGGGCT-TG    198
                     ||||||||.||||||||||||||.||||||||.||.||| ||||||| |.
RBAM_004280__    151 GCGCTTGCGGCGGAAAAAGGCGTGAAAATCGGCGCTCATCCCGGGCTGTT    200

BSNT_00710___    199 CCGGATTTACTCGGTTTTGGGCGCCGCAATATGGCGATTTCTCCTGAGGA    248
                     |  |||.|.|..||.||.|||||.||..|.||.||||||.|.||.|||||
RBAM_004280__    201 C--GATCTGCAGGGATTCGGGCGGCGTCAGATCGCGATTACACCCGAGGA    248

BSNT_00710___    249 AGCGTATGATCTTGTCG-TTTATCAAATTGGCGCGCTCTCTGGCTTTCTA    297
                     ||||||||||| ||.|| |.||.|||||.||||||||.||.||.|||.||
RBAM_004280__    249 AGCGTATGATC-TGACGCTGTACCAAATCGGCGCGCTGTCAGGGTTTTTA    297

BSNT_00710___    298 AAAGCAGAGGGACTTCACATGCAGCACGTCAAGCCGCATGGCGCTTTATA    347
                     ||||||||.||..|..|.||||||||.||.||||||||.|||||||||||
RBAM_004280__    298 AAAGCAGAAGGTGTCGAGATGCAGCATGTGAAGCCGCACGGCGCTTTATA    347

BSNT_00710___    348 CAATATGGCGGCAGTCGATCAAAAACTGTCGGATGCTATCGCGAAAGCTG    397
                     .||||||||.||.|||.|||.....|||||.||.||.|||||..|.||.|
RBAM_004280__    348 TAATATGGCCGCCGTCAATCCCGGCCTGTCAGAAGCCATCGCTCAGGCGG    397

BSNT_00710___    398 TCTATAAGATTGATCCAGGCCTGATTCTTTTCGGTCTTGCTGAGAGTGAG    447
                     |||.|.|..|||||||.||.||.|||||||||||.|||.|.|..||.|||
RBAM_004280__    398 TCTGTCATTTTGATCCCGGGCTTATTCTTTTCGGGCTTTCCGGAAGCGAG    447

BSNT_00710___    448 CTTGTAAAAGCGGGAGAACGGATCGGACTTCAGACCGCAAATGAAGTGTT    497
                     ||..|.|||||||||||.||.||||||||...|||.||||..||||||||
RBAM_004280__    448 CTGATTAAAGCGGGAGATCGAATCGGACTGAGGACGGCAAGCGAAGTGTT    497

BSNT_00710___    498 CGCCGACAGAACATACCAATCGGACGGCACGCTGACACCGCGCTCCCAGC    547
                     .||.|||.|.||.||.||....||||||||||||||.|||||.||..|||
RBAM_004280__    498 TGCGGACCGCACCTATCAGGAAGACGGCACGCTGACGCCGCGTTCAGAGC    547

BSNT_00710___    548 CGGACGCACTCATTGAAAGTGATGATGCC------GCCGTCACCCAGGTC    591
                     ||||.||.||.||      |.|.||||.|      ||.|||...||.||.
RBAM_004280__    548 CGGATGCGCTGAT------TCAGGATGACAAAAAAGCGGTCGGTCAAGTG    591

BSNT_00710___    592 ATCAAAATGGTGAAAGAAGGGGCGGTCAAATCTCAGCAA-GGACATGATG    640
                     ||..|||||||||||||..|..||||.|.|||.| |.|| |||||.|.||
RBAM_004280__    592 ATTCAAATGGTGAAAGACAGCACGGTGACATCAC-GTAAGGGACAAGCTG    640

BSNT_00710___    641 T--GTCATTAAAAGCAGATACAGTCTGCATTCATGGAGATGGAGCCCATG    688
                     |  |.|  |.|||||.||.||||||||||||||.|||||.||||||||.|
RBAM_004280__    641 TAAGCC--TGAAAGCGGACACAGTCTGCATTCACGGAGACGGAGCCCACG    688

BSNT_00710___    689 CGCTGACATTTGCGCAAAA--AATCAGAAAACAGCTCAAAGCGGCTGGAA    736
                     |.||.|||||  |||||||  |||||.||||.|..|.||||||||.|..|
RBAM_004280__    689 CCCTCACATT--CGCAAAAACAATCAAAAAAGAATTAAAAGCGGCAGACA    736

BSNT_00710___    737 TTGAAGTGACAGCTATTTCAGA--ACAGAGGTCAACATAA    774
                     ||.||.|.|..||..|||||.|  ||.||           
RBAM_004280__    737 TTCAAATCAGCGCGCTTTCAAAAGACTGA-----------    765


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