Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00706 and RBAM_004260

See DNA alignment / Visit BSNT_00706 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:28
# Commandline: needle
#    -asequence pep-align/BSNT_00706___ycsD.1.9828.seq
#    -bsequence pep-align/RBAM_004260___ycsD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00706___ycsD-RBAM_004260___ycsD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00706___ycsD-RBAM_004260___ycsD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00706___ycsD
# 2: RBAM_004260___ycsD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 131
# Identity:      93/131 (71.0%)
# Similarity:   109/131 (83.2%)
# Gaps:           1/131 ( 0.8%)
# Score: 472.0
# 
#
#=======================================

BSNT_00706___      1 MNSLPLPHRYPFMFIDGVTDSEPGKHAAAYKLISENDWFITDTQTEMPFS     50
                     ||...||||:||:.|||.|:||.||.|||||.|||||||||::|.|||||
RBAM_004260__      1 MNQKLLPHRFPFLLIDGTTNSEAGKWAAAYKNISENDWFITESQREMPFS     50

BSNT_00706___     51 LVIEALAQTAAFTGITDENSLGLLSSVKKAEKLGEAVPGDRLDLTFEVTR    100
                     ||:||:|||||..|||..:.|||||:|||||:||:|:|||||||.|||||
RBAM_004260__     51 LVVEAMAQTAACAGITGGDGLGLLSAVKKAERLGDALPGDRLDLFFEVTR    100

BSNT_00706___    101 NRRGFVFGHAKASVGEQPVAEAEIGIYIEK-    130
                     .|||||||.|||||..:||||||:.|:|:. 
RBAM_004260__    101 IRRGFVFGRAKASVAGKPVAEAELSIFIQPS    131


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