Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00706 and RBAM_004260
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:28
# Commandline: needle
# -asequence dna-align/BSNT_00706___ycsD.1.9828.seq
# -bsequence dna-align/RBAM_004260___ycsD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00706___ycsD-RBAM_004260___ycsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00706___ycsD-RBAM_004260___ycsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00706___ycsD
# 2: RBAM_004260___ycsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 403
# Identity: 282/403 (70.0%)
# Similarity: 282/403 (70.0%)
# Gaps: 17/403 ( 4.2%)
# Score: 940.5
#
#
#=======================================
BSNT_00706___ 1 ATGAACTCATTACCT-TTGCCTCACCGCTATCCATTTATGTTTATTGATG 49
||||| |||..|.|| |||||.||.||.|.|||.|||.|.||.|||||.|
RBAM_004260__ 1 ATGAA-TCAGAAGCTATTGCCCCATCGTTTTCCGTTTCTTTTGATTGACG 49
BSNT_00706___ 50 GCGTGACGGATAGCGAGCCCGGCAAACATGCGGCAGCTTATAAGCTGATT 99
||..||||.|.||.||..||||.|||...|||||.|||||.||....||.
RBAM_004260__ 50 GCACGACGAACAGTGAAGCCGGAAAATGGGCGGCTGCTTACAAAAACATC 99
BSNT_00706___ 100 AGTGAGAACGATTGGTTTATTACTGATACGCAAACAGAAATGCCGTTTTC 149
|||||.||.||.||||||||.|||||..|.||||.|||.|||||.|||||
RBAM_004260__ 100 AGTGAAAATGACTGGTTTATAACTGAATCCCAAAGAGAGATGCCATTTTC 149
BSNT_00706___ 150 ACTTGTGATTGAAGCGCTTGCGCAAACCGCGGCTTTTACAGGAATTACAG 199
.||.||..|||||||..|.||.|||||.|||||||...|.||||||||.|
RBAM_004260__ 150 GCTCGTCGTTGAAGCAATGGCCCAAACGGCGGCTTGCGCGGGAATTACCG 199
BSNT_00706___ 200 ATGAGAACAGCTTGGGATTATTGTCTTCGGTGAAGAAAGCGGAAAAGCTG 249
..|...||.||.|.||..|.||.||..||||||||||||||||||.|.|.
RBAM_004260__ 200 GCGGTGACGGCCTCGGTCTCTTATCCGCGGTGAAGAAAGCGGAAAGGTTA 249
BSNT_00706___ 250 GGAGAAGCTGTGCCTGGTGACCGGCTTGATCTTACGTTTGAAGTCACGCG 299
||.||.|||.||||.||.|||||.||.||||||...|||||.||||||||
RBAM_004260__ 250 GGTGACGCTTTGCCGGGAGACCGTCTGGATCTTTTTTTTGAGGTCACGCG 299
BSNT_00706___ 300 CAATC-GGCGCGGGTTTGTGTTCGGACATGCCAAGGCATCAGTTGGAGAG 348
|||| |.|||||.|||||||||||.|..||.||.||.||.||||..|.|
RBAM_004260__ 300 -AATCAGACGCGGTTTTGTGTTCGGCCGGGCGAAAGCGTCCGTTGCCGGG 348
BSNT_00706___ 349 CAGCCTGTTGCTGAAGCTGAAATCGGCATCTAT--------ATTGAAAAA 390
.|||||||.||.||||||||..||.||||.|.| ||.|.||
RBAM_004260__ 349 AAGCCTGTGGCGGAAGCTGAGCTCAGCATATTTATCCAGCCATCGTAA-- 396
BSNT_00706___ 391 TGA 393
RBAM_004260__ 396 --- 396
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