Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
Amino acid alignment: BSNT_00684 and RBAM_004140
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence pep-align/BSNT_00684___gabR.1.9828.seq
# -bsequence pep-align/RBAM_004140___gabR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile pep-align/BSNT_00684___gabR-RBAM_004140___gabR.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00684___gabR-RBAM_004140___gabR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00684___gabR
# 2: RBAM_004140___gabR
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 479
# Identity: 336/479 (70.1%)
# Similarity: 394/479 (82.3%)
# Gaps: 10/479 ( 2.1%)
# Score: 1762.0
#
#
#=======================================
BSNT_00684___ 1 MDITITLDRSERADYIYQQIYQKLKKEILSRNLLPHSKVPSKRELAENLK 50
.:||::|.||.||||||||||.:|..:|.|:|:||:||||||||||.||
RBAM_004140__ 1 -MLTISIDHSETADYIYQQIYQHIKAAVLKRSLMPHTKVPSKRELAETLK 49
BSNT_00684___ 51 VSVNSVNSAYQQLLAEGYLYAIERKGFFVEELDMFSAEEHPPFALPDDLK 100
||||||||||||||:||||||:|||||||||:|....||.|...|||:||
RBAM_004140__ 50 VSVNSVNSAYQQLLSEGYLYAVERKGFFVEEIDTVYHEETPSLLLPDNLK 99
BSNT_00684___ 101 EIHIDQSDWISFSHMSSDTDHFPIKSWFRCEQKAASRSYRRLGDMSHPQG 150
|...|:|.||||||||.||.|||:|||||||.|||:||:..||::.||||
RBAM_004140__ 100 ERETDKSGWISFSHMSVDTAHFPLKSWFRCEHKAAARSFHTLGELVHPQG 149
BSNT_00684___ 151 IYEVRAAITRLISLTRGVKCRPEQMIIGAGTQVLMQLLTELLPKEAVYAM 200
:||||..|:|||||||||.|||||:::|||||:|:|||||||||:|:|||
RBAM_004140__ 150 LYEVRETISRLISLTRGVTCRPEQIVLGAGTQLLVQLLTELLPKDALYAM 199
BSNT_00684___ 201 EEPGYRRMYQLLKNAGKQVKTIMLDEKGMSIAEITRQQPDVLVTTPSHQF 250
|.|||.|||:||:|.||:|.||.|||||||:.||.:::|.||:|||||||
RBAM_004140__ 200 ENPGYMRMYRLLQNLGKKVATISLDEKGMSMDEIEKRRPSVLITTPSHQF 249
BSNT_00684___ 251 PSGTIMPVSRRIQLLNWAAEEPRRYIIEDDYDSEFTYDVDSIPALQSLDR 300
|||.|||.||||||||||||:..|:||||||||||.||.|:|||||||||
RBAM_004140__ 250 PSGVIMPASRRIQLLNWAAEQNGRFIIEDDYDSEFKYDADTIPALQSLDR 299
BSNT_00684___ 301 FQNVIYMGTFSKSLLPGLRISYMVLPPELLRAYKQRGYDLQTCSSLTQLT 350
||||||||||||||.||||||||||||.|||.:|:|.|||.|||:|.||.
RBAM_004140__ 300 FQNVIYMGTFSKSLFPGLRISYMVLPPGLLRTFKERTYDLHTCSTLAQLA 349
BSNT_00684___ 351 LQEFIESGEYQKHIKKMKQHYKEKRERLITALEAEFSGEVTVKGANAGLH 400
|:||||||||||||||||||||..|||||:|||..|...::|||||||||
RBAM_004140__ 350 LKEFIESGEYQKHIKKMKQHYKNIRERLISALEETFGERISVKGANAGLH 399
BSNT_00684___ 401 FVTEFDTRRTEQDILSHAAGLQLEIFGMSRFNLKENKRQTGRPALIIGFA 450
||||||..|:|::||:.|...||::|.||||.||.. ..:.:|.||:|||
RBAM_004140__ 400 FVTEFDCARSEKEILARADAEQLDLFAMSRFRLKAG-GDSNKPQLILGFA 448
BSNT_00684___ 451 RLKEEDVQAGVQRLFKAVYGHKKIPVTGD 479
||||.|:|.||.||::||:|.
RBAM_004140__ 449 RLKESDIQEGVYRLYRAVFGA-------- 469
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