Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00684 and RBAM_004140
See
Amino acid alignment /
Visit
BSNT_00684 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:26
# Commandline: needle
# -asequence dna-align/BSNT_00684___gabR.1.9828.seq
# -bsequence dna-align/RBAM_004140___gabR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00684___gabR-RBAM_004140___gabR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00684___gabR-RBAM_004140___gabR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00684___gabR
# 2: RBAM_004140___gabR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1518
# Identity: 1014/1518 (66.8%)
# Similarity: 1014/1518 (66.8%)
# Gaps: 186/1518 (12.3%)
# Score: 3328.0
#
#
#=======================================
BSNT_00684___ 1 ATGGATATCACAATTACACTCGATCGTTCAG-AGCGAGCCGATTATATCT 49
||| .|.||.|||.|..|.||||.|||.| |.|| ||.||||||||||
RBAM_004140__ 1 ATG---CTGACGATTTCCATTGATCATTCGGAAACG-GCGGATTATATCT 46
BSNT_00684___ 50 ATCAGCAAATTTATCAAAAGCTGAAAAAAGAAATCCTCAGC--------- 90
|||||||.||.|||| |||..|.||||| |.||
RBAM_004140__ 47 ATCAGCAGATCTATC---AGCACATAAAAG-------CGGCCGTTTTGAA 86
BSNT_00684___ 91 -CGCAATCTGCTGCCGCACTCGAAGGTTCCCTCCAAGCGGGAGCTGGCTG 139
||||..|||.||||.||..|.|||||.||.||.||.||||||||.||.|
RBAM_004140__ 87 GCGCAGCCTGATGCCTCATACAAAGGTGCCGTCTAAACGGGAGCTTGCCG 136
BSNT_00684___ 140 AAAATCTCAAGGTCAGCGTAAATTCAGTGAATTCAGCCTATCAGCAGCTG 189
|.|..||||||||||||||.|||||||||||||||||.||||||||||||
RBAM_004140__ 137 AGACACTCAAGGTCAGCGTGAATTCAGTGAATTCAGCTTATCAGCAGCTG 186
BSNT_00684___ 190 CTGGCTGAAGGGTATTTGTACGCCATTGAACGAAAGGGTTTCTTCGTGGA 239
||..|.|||||.|||||.||.||..|.|||.||||.|||||.||||||||
RBAM_004140__ 187 CTTTCAGAAGGTTATTTATATGCAGTCGAAAGAAAAGGTTTTTTCGTGGA 236
BSNT_00684___ 240 GGAACTAGACATGTTTT-----------CCGCCGAGGAGCACCCTCCATT 278
||||.|.||.|.|.||| .|||| ||
RBAM_004140__ 237 GGAAATTGATACGGTTTATCATGAAGAAACGCC---------------TT 271
BSNT_00684___ 279 TGC----ACTGCCGGATGATCTAAAAGAGATTCACATCGACCAGAGCGAT 324
.|| |.||||.|||.||.|.||||||....|.|..||..|.||||..
RBAM_004140__ 272 CGCTCCTATTGCCTGATAATTTGAAAGAGCGGGAGACGGATAAAAGCGGC 321
BSNT_00684___ 325 TGGATATCGTTTTCACACATGAGTTCCGATACAGACCATTTTCCGATCAA 374
|||||.||||||||.||.|||||....|||||.|..|||||.||..|.||
RBAM_004140__ 322 TGGATTTCGTTTTCTCATATGAGCGTGGATACGGCGCATTTCCCCCTGAA 371
BSNT_00684___ 375 AAGCTGGTTCCGCTGCGAGCAAAAAGCGGCCTCCCGCTCATACCGCAGGC 424
|||||||||||||||.||.||.|||||.|||.||||.||||..|..|..|
RBAM_004140__ 372 AAGCTGGTTCCGCTGTGAACATAAAGCAGCCGCCCGTTCATTTCATACAC 421
BSNT_00684___ 425 TCGGCGATAT-GTCACATCCGCAAGGGATATATGAA----GTGAGAGCGG 469
||||.||..| ||| ||.||||||||..|||||||| ||||.|
RBAM_004140__ 422 TCGGAGAACTCGTC-CACCCGCAAGGTTTATATGAAGTCCGTGAAA---- 466
BSNT_00684___ 470 CCATTACGAGGCTCATTTCCCTGACGAGGGGTGTAAAATGCAGGCCGGAA 519
|.|||.||.||||.|||||||||||.|||||.||.|.||||.|.||||||
RBAM_004140__ 467 CAATTTCGCGGCTTATTTCCCTGACAAGGGGCGTTACATGCCGCCCGGAA 516
BSNT_00684___ 520 CAAATGATCATAGGGGCAGGCACACAGGTGCTCATGCAGCTGTTGACTGA 569
|||||..|..|.||.||.|||||.||..||||..||||||||.||||.||
RBAM_004140__ 517 CAAATCGTGCTCGGAGCGGGCACGCAATTGCTGGTGCAGCTGCTGACGGA 566
BSNT_00684___ 570 GCTTTTACCCAAGGAAGCCGTGTATGCGATGGAGGAGCCTGGCTACAGGC 619
.||..|.||.||.||.||..|.||.||.||||||.|.||.||.||.|.|.
RBAM_004140__ 567 ACTGCTGCCAAAAGACGCACTCTACGCCATGGAGAACCCGGGATATATGA 616
BSNT_00684___ 620 GCATGTATCAGCTTTTGAAGAATGCCGGAAAACAAGTAAAGACGATCATG 669
|.|||||.|.|||..||.|.||...|||.|||.|.||...||||||||..
RBAM_004140__ 617 GGATGTACCGGCTGCTGCAAAACCTCGGGAAAAAGGTTGCGACGATCAGC 666
BSNT_00684___ 670 CTGGATGAAAAAGGCATGTCGATTGCTGAAATCACCAGACAGCAGCCAGA 719
||.|||||||||||||||||.||.|..||||||...|.||..|.|||...
RBAM_004140__ 667 CTTGATGAAAAAGGCATGTCCATGGACGAAATCGAAAAACGCCGGCCCTC 716
BSNT_00684___ 720 TGTGCTGGTGACCACCCCGTCGCATCAGTTTCCGTCCGGAACGATTATGC 769
|||..||.|.|||||.||.||.|||||.||.||.||.||...|||.||||
RBAM_004140__ 717 TGTATTGATCACCACGCCTTCCCATCAATTCCCCTCAGGCGTGATCATGC 766
BSNT_00684___ 770 CTGTATCCAGAAGAATTCAGCTGCTGAACTGGGCAGCCGAGGAG-CCGCG 818
|.|..|||.|..|.||||||||..|.||||||||.|||||..|| .|| |
RBAM_004140__ 767 CGGCTTCCCGGCGGATTCAGCTTTTAAACTGGGCCGCCGAACAGAACG-G 815
BSNT_00684___ 819 CCGATATATCATTGAGGACGATTATGATAGTGAATTCACATATGATGTAG 868
|||.|..||||||||.||.||||||||.||||||||.|.||||||.|..|
RBAM_004140__ 816 CCGCTTCATCATTGAAGATGATTATGACAGTGAATTTAAATATGACGCCG 865
BSNT_00684___ 869 ACAGTATTCCGGCGCTGCAAAGCCTCGACCGTTTTCAAAATGTCATCTAT 918
|.|..||.||||||||.||||||||.|||||.|||||||||||||||||.
RBAM_004140__ 866 ATACAATACCGGCGCTTCAAAGCCTTGACCGGTTTCAAAATGTCATCTAC 915
BSNT_00684___ 919 ATGGGAACCTTTTCAAAGTCCCTTCTCCCCGGCTTGCGGATCAGCTATAT 968
|||||.|||||||||||.||||||.||||.||..||||.|||||||||||
RBAM_004140__ 916 ATGGGGACCTTTTCAAAATCCCTTTTCCCAGGTCTGCGCATCAGCTATAT 965
BSNT_00684___ 969 GGTGTTGCCGCCTGAGCTGTTGAGGGCATACAAACAG----CGGGGCTAT 1014
|||..|||||||.|.|||.|||.||.|.|.||||.|| || |||
RBAM_004140__ 966 GGTTCTGCCGCCCGGGCTTTTGCGGACGTTCAAAGAGAGAACG----TAT 1011
BSNT_00684___ 1015 GATCTGCAGACTTGCTCATCA--CTCACACAGCTCACCCTGCAGGAATTT 1062
||.|||||.||.|| ||.|| ||..|.||||||.|.|||.|.||||||
RBAM_004140__ 1012 GACCTGCATACGTG--CAGCACGCTTGCCCAGCTCGCGCTGAAAGAATTT 1059
BSNT_00684___ 1063 ATCGAGTCTGGTGAATATCAGAAGCATATAAAAAAAATGAAGCAGCATTA 1112
|||||.||.||||||||||||||.|||||.|||||.||||||||||||||
RBAM_004140__ 1060 ATCGAATCAGGTGAATATCAGAAACATATTAAAAAGATGAAGCAGCATTA 1109
BSNT_00684___ 1113 TAAAGAAAAGA-GAGAACGCCTGATCACCGCTTTAGAAGCAGAGTTCAGC 1161
| |||||.|.| |.||||||||.||..|.|||||.||||.|...|| |
RBAM_004140__ 1110 T-AAGAACATACGGGAACGCCTCATTTCGGCTTTGGAAGAAACATT---C 1155
BSNT_00684___ 1162 GGAGA-------GGTTACCGTAAAAGGGGCAAATGCGGGGCTGCATTTTG 1204
||||| .|| |||||.||.||.|||||||||||.|||||||
RBAM_004140__ 1156 GGAGAAAGAATCAGT----GTAAAGGGCGCCAATGCGGGGCTTCATTTTG 1201
BSNT_00684___ 1205 TTACCGAATTTGA-TACCAGGCGCACC-----GAACAAGACATCCTGTCA 1248
|.||.||.||||| | |||| || |||.||||.||..||.||
RBAM_004140__ 1202 TCACTGAGTTTGACT-----GCGC-CCGTTCAGAAAAAGAGATATTGGCA 1245
BSNT_00684___ 1249 CATGCTGCCGGGCTG-----CAGCTTGAAATATTCGGAATGAGCCGATTT 1293
|..|| ||.|| |||||.||..|.||.|..||||||||.||.
RBAM_004140__ 1246 CGGGC-----GGATGCAGAACAGCTCGATCTGTTTGCGATGAGCCGGTTC 1290
BSNT_00684___ 1294 AACTTGAA----GGA--------AAACAAGCGGCAAACGGGCAGGCCTGC 1331
....|||| ||| ||||||.|.||| ||
RBAM_004140__ 1291 CGTCTGAAAGCGGGAGGCGATTCAAACAAACCGCA-------------GC 1327
BSNT_00684___ 1332 TCTCATTATC---GGCTTTGCACGGCTGAAGGAAGA-AGATGTTC----A 1373
||||| ||.||.||.||.||||||| ||| .|||.||| |
RBAM_004140__ 1328 -----TTATCCTGGGATTCGCCCGCCTGAAGG-AGAGCGATATTCAAGAA 1371
BSNT_00684___ 1374 GGCGGGTGTGCAGCGGCTTTTCAAAGCGGTTTACGG-ACATAAAAAAATC 1422
||| ||.|.|| ||||||.|...|||||||.||| .|||||
RBAM_004140__ 1372 GGC--GTCTACA--GGCTTTACCGGGCGGTTTTCGGCGCATAA------- 1410
BSNT_00684___ 1423 CCCGTTACAGGGGATTGA 1440
RBAM_004140__ 1410 ------------------ 1410
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.