Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00681 and RBAM_004110

See DNA alignment / Visit BSNT_00681 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence pep-align/BSNT_00681___ycnD.1.9828.seq
#    -bsequence pep-align/RBAM_004110___ycnD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00681___ycnD-RBAM_004110___ycnD.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00681___ycnD-RBAM_004110___ycnD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00681___ycnD
# 2: RBAM_004110___ycnD
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 249
# Identity:     201/249 (80.7%)
# Similarity:   226/249 (90.8%)
# Gaps:           1/249 ( 0.4%)
# Score: 1048.0
# 
#
#=======================================

BSNT_00681___      1 MNEVIKSLTDHRSIRSYIDEPVAQEQLDQIIEAVQSAPSSINGQQVTVIT     50
                     ||||::.||||||||||.||||:.||||.||:|.|:||:||||||.|||.
RBAM_004110__      1 MNEVLQLLTDHRSIRSYTDEPVSDEQLDLIIQAAQAAPTSINGQQFTVIA     50

BSNT_00681___     51 VQDKERKKKISELAGGQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEI    100
                     |:|||||||||||||||||||||||||||||||||||||||:.:|..:||
RBAM_004110__     51 VKDKERKKKISELAGGQPWIDQAPVFLLFCADFNRAKIALEEYNDTPLEI    100

BSNT_00681___    101 TNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLE    150
                     |||||||||||||.|||||||||||||:||||||||||||.|.||||||:
RBAM_004110__    101 TNGLESVLVGAVDVGIALGTATAAAESMGLGTVPIGAVRGKPDELIELLK    150

BSNT_00681___    151 LPKYVFPLSGLVIGHPADRSAKKPRLPQEAVNHQETYLNQDELTSHIQAY    200
                     |||||||:||||||||||||||||||||.||.|.||| .:::|.:||:||
RBAM_004110__    151 LPKYVFPVSGLVIGHPADRSAKKPRLPQAAVLHHETY-QEEDLRTHIEAY    199

BSNT_00681___    201 DEQMSEYMNKRTNGKETRNWSQSIASYYERLYYPHIREMLEKQGFKVEK    249
                     |:||||||.|||:|:|||||||.|.|||:::|||||||||||||||.:|
RBAM_004110__    200 DKQMSEYMKKRTDGQETRNWSQGITSYYKQIYYPHIREMLEKQGFKTDK    248


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