Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00681 and RBAM_004110

See Amino acid alignment / Visit BSNT_00681 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence dna-align/BSNT_00681___ycnD.1.9828.seq
#    -bsequence dna-align/RBAM_004110___ycnD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00681___ycnD-RBAM_004110___ycnD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00681___ycnD-RBAM_004110___ycnD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00681___ycnD
# 2: RBAM_004110___ycnD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 769
# Identity:     564/769 (73.3%)
# Similarity:   564/769 (73.3%)
# Gaps:          41/769 ( 5.3%)
# Score: 2048.5
# 
#
#=======================================

BSNT_00681___      1 ATGAATGAAGTGATTAAATCTTTAACAGACCACCGCTCGATTCGCAGCTA     50
                     |||||.|||||..||.|||..||||||||||||||.||.||.||||||||
RBAM_004110__      1 ATGAACGAAGTCCTTCAATTATTAACAGACCACCGTTCCATCCGCAGCTA     50

BSNT_00681___     51 CATAGATGAGCCTGTAGCTCAGGAGCAATTGGACCAAATCATTGAAGCGG    100
                     ||.||||||.||||||.|..|.||.||..||||.|..|||||..||||.|
RBAM_004110__     51 CACAGATGAACCTGTATCGGATGAACAGCTGGATCTTATCATCCAAGCCG    100

BSNT_00681___    101 TGCAATCAGCCCCTTCTTCTATCAACGGACAGCAAGTGACTGTGATCACA    150
                     ..||..||||.||..||||.||.|||||.||||||.|.||.||.||..|.
RBAM_004110__    101 CTCAGGCAGCGCCGACTTCCATTAACGGCCAGCAATTTACCGTTATTGCG    150

BSNT_00681___    151 GTCCAGGATAAAGAGCGTAAAAAGAAAATCTCCGAGCTGGCAGGCGGCCA    200
                     ||..|.|||||.|||||.||.||.|||||.|||||..||||.||||||||
RBAM_004110__    151 GTGAAAGATAAGGAGCGGAAGAAAAAAATATCCGAATTGGCTGGCGGCCA    200

BSNT_00681___    201 GCCATGGATCGATCAAGCTCCTGTTTTCCTGCTGTTCTGCGCAGATTTCA    250
                     |||.|||||.||.|||||.||.||||||||..|.||||||||.|||||.|
RBAM_004110__    201 GCCGTGGATTGACCAAGCGCCGGTTTTCCTTTTATTCTGCGCTGATTTTA    250

BSNT_00681___    251 ACCGGGCCAAAATTGCGCTTGAAGATCTGCATGATTTCAAAATG------    294
                     ||||.||||||||||||||||||||   |.||        ||||      
RBAM_004110__    251 ACCGCGCCAAAATTGCGCTTGAAGA---GTAT--------AATGATACAC    289

BSNT_00681___    295 -----GAAATCACAAATGGATTGGAATCTGTTCTT-GTCGGCGCAGTAGA    338
                          ||.|||||.||.||.||.||.||.| |||| |||||.||.|||||
RBAM_004110__    290 CGCTTGAGATCACGAACGGTTTAGAGTCCG-TCTTAGTCGGAGCCGTAGA    338

BSNT_00681___    339 CGCTGGTATTGCCCTCGGCACAGCAACAGCAGCGGCTGAGTCACTCGGAC    388
                     .|..||.|||||.||.||.||.|||||.||.||||||||.|||.|.||||
RBAM_004110__    339 TGTCGGGATTGCGCTGGGTACGGCAACGGCTGCGGCTGAATCAATGGGAC    388

BSNT_00681___    389 TTGGCACAGTTCCGATCGGTGCGGTTCGCGGAAACCCTCAAGAGCTGATC    438
                     |.|||||.||.||||||||.||.||.|||||.||.||..|.||.||.||.
RBAM_004110__    389 TCGGCACTGTGCCGATCGGCGCCGTGCGCGGCAAGCCGGACGAACTCATT    438

BSNT_00681___    439 GAACTGCTTGAGCTTCCAAAATACGTGTTCCCTTTATCCGGCCTTGTCAT    488
                     |||.||||..|.|||||.||||||||.|||||..|.|||||.||.|||||
RBAM_004110__    439 GAATTGCTGAAACTTCCGAAATACGTTTTCCCGGTTTCCGGTCTCGTCAT    488

BSNT_00681___    489 TGGGCATCCTGCCGACCGTTCAGCGAAAAAACCGCGCTTGCCGCAGGAAG    538
                     .||.|||||.||.|||||.||.||||||||||||||..|||||||.|.||
RBAM_004110__    489 CGGCCATCCGGCAGACCGCTCCGCGAAAAAACCGCGTCTGCCGCAAGCAG    538

BSNT_00681___    539 CTGTCAATCATCAGGAAACTTATTTGAATCAGGATGAGCTGACGTCT---    585
                     |.||....|||||.|||||      |.||||.||.||    |..|.|   
RBAM_004110__    539 CCGTTCTGCATCATGAAAC------GTATCAAGAAGA----AGATTTAAG    578

BSNT_00681___    586 --CACAT-TC-AGGCATACGACGAACAGATGTCTGAATACATGAATAAAC    631
                       ||||| || ||||.||.|||.|.||||||||.|||||||||||.||||
RBAM_004110__    579 AACACATATCGAGGCCTATGACAAGCAGATGTCCGAATACATGAAAAAAC    628

BSNT_00681___    632 GGACAAACGGAAAAGAAACAAGAAATTGGTCACAGAGCATCGCTTCCTAC    681
                     |.||..|||||.|.|||||.|||||.||||||||..|||||.|.||||||
RBAM_004110__    629 GCACCGACGGACAGGAAACGAGAAACTGGTCACAAGGCATCACCTCCTAC    678

BSNT_00681___    682 TATGAGCGCCTGTACTATCCGCACATCCGTGAAATGCTTGAAAAACAAGG    731
                     |||.|||...|.||.|||||.|||||.|||||||||||||||||||||||
RBAM_004110__    679 TATAAGCAGATTTATTATCCTCACATTCGTGAAATGCTTGAAAAACAAGG    728

BSNT_00681___    732 ATTTAAAGTTGAAAAATAA    750
                     .|||||....||.||||||
RBAM_004110__    729 GTTTAAGACGGATAAATAA    747


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00681 and RBAM_004110

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
