Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00677 and RBAM_004080

See DNA alignment / Visit BSNT_00677 in genome browser / Return to Orthologue table 
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence pep-align/BSNT_00677___yclQ.1.9828.seq
#    -bsequence pep-align/RBAM_004080___yclQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00677___yclQ-RBAM_004080___yclQ.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00677___yclQ-RBAM_004080___yclQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00677___yclQ
# 2: RBAM_004080___yclQ
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 317
# Identity:     238/317 (75.1%)
# Similarity:   270/317 (85.2%)
# Gaps:           3/317 ( 0.9%)
# Score: 1231.0
# 
#
#=======================================

BSNT_00677___      1 MKKFALLFIALVTAVVISACGNQSTSSKGSDSKEEQITVKHQLDKNGTKV     50
                     |||||||||||||..|:|||||   ..|.|...:|.||:|..|:|.|.||
RBAM_004080__      1 MKKFALLFIALVTIFVVSACGN---GDKTSGKSKETITIKDDLNKEGVKV     47

BSNT_00677___     51 PKSPKKVVVFDFGSLDTLDKLGLDDKVAGLPKQALPKYLSKFKDDKYADV    100
                     ||:|||||||:||.|||:|:|||.|.|||||||.||||||.:|.||||:.
RBAM_004080__     48 PKNPKKVVVFNFGMLDTMDELGLQDHVAGLPKQNLPKYLSSYKSDKYANT     97

BSNT_00677___    101 GSLKEPDFEKVADLDPDLIIISGRQSESYKEFSEIAPTIYLGVDTAKYME    150
                     |.|||||||||||:|||||||:.|||:||||||:|||||||..|...|::
RBAM_004080__     98 GGLKEPDFEKVADIDPDLIIIAHRQSDSYKEFSKIAPTIYLDDDYTNYVD    147

BSNT_00677___    151 SFKSDAETIGKIFDKEDEVKDELAKIDHSIADVKKTAEKLNKNGLVIMAN    200
                     .||.:.|.|||||:||:||||:|||||.||||:||.....:|||||:|||
RBAM_004080__    148 RFKHNTEVIGKIFNKENEVKDKLAKIDKSIADLKKKTSSTDKNGLVVMAN    197

BSNT_00677___    201 DGKISAFGPKSRYGLIHDVFGVTPADKNIKASTHGQSVSYEYISKTNPDY    250
                     ||||||||.|||||.|||||||.||||||:||.||||:|||||:||||||
RBAM_004080__    198 DGKISAFGSKSRYGFIHDVFGVKPADKNIEASLHGQSISYEYIAKTNPDY    247

BSNT_00677___    251 LFVIDRGTAIGETSSTKQVVENDYVKNVNAVKNDHVVYLDSATWYLSGGG    300
                     :||:|||||||..|||||||||||||:|.||||:||||||||||||||||
RBAM_004080__    248 MFVVDRGTAIGTKSSTKQVVENDYVKSVKAVKNNHVVYLDSATWYLSGGG    297

BSNT_00677___    301 LESMAQMIKEVKDGLEK    317
                     |||||||:||||||:||
RBAM_004080__    298 LESMAQMVKEVKDGIEK    314


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