Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_00677 and RBAM_004080

See Amino acid alignment / Visit BSNT_00677 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:26
# Commandline: needle
#    -asequence dna-align/BSNT_00677___yclQ.1.9828.seq
#    -bsequence dna-align/RBAM_004080___yclQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_00677___yclQ-RBAM_004080___yclQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00677___yclQ-RBAM_004080___yclQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00677___yclQ
# 2: RBAM_004080___yclQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 972
# Identity:     717/972 (73.8%)
# Similarity:   717/972 (73.8%)
# Gaps:          45/972 ( 4.6%)
# Score: 2570.5
# 
#
#=======================================

BSNT_00677___      1 ATGAAAAAGTTCGCATTACTATTCATCGCTTTGGTGACGGCAGTTGTGAT     50
                     ||||||||.||||||||.||||||||.||..|.||.|||....||||..|
RBAM_004080__      1 ATGAAAAAATTCGCATTGCTATTCATTGCGCTCGTTACGATTTTTGTTGT     50

BSNT_00677___     51 TTCTGCATGCGGAAAC-----CAAAGCACAAGCAGCAAAGGTTCTGATTC     95
                     ||||||||||||||||     ||||.||..||  |||||         ||
RBAM_004080__     51 TTCTGCATGCGGAAACGGGGACAAAACATCAG--GCAAA---------TC     89

BSNT_00677___     96 TAAGGAAGAACAAATCACGGTGAAACACCAGCTGGACAAAAACGGAACAA    145
                     .|   |||||..||||||..|.|||.|..|.|||.|||||.|.||....|
RBAM_004080__     90 AA---AAGAAACAATCACAATCAAAGATGACCTGAACAAAGAAGGCGTCA    136

BSNT_00677___    146 AAGTACCGAAGAGCCCTAAAAAAGTTGTCGTATTTGACTTTGGAA-GCTT    194
                     ||||.|||||||..||.||||||||.||||||||..||||.|||| || |
RBAM_004080__    137 AAGTGCCGAAGAATCCGAAAAAAGTCGTCGTATTCAACTTCGGAATGC-T    185

BSNT_00677___    195 AGATACACTAGATAAACTTGGTCTTGATGATAAAGTAGCGGGACTGCCGA    244
                     .||.||..|.|||.||||.|||.|..|.|||.|.||.||||||||.||||
RBAM_004080__    186 GGACACGATGGATGAACTCGGTTTACAGGATCACGTGGCGGGACTTCCGA    235

BSNT_00677___    245 AACAAGCCCTTCCTAAATA--TCTGTCCAAATTCAAGGATGACAAATATG    292
                     |||||..||||||.|||||  |.|.|.||.||..|||  |||.|||||.|
RBAM_004080__    236 AACAAAACCTTCCAAAATACTTATCTTCATATAAAAG--TGATAAATACG    283

BSNT_00677___    293 CTGACGTCGGAAGCTTAAAAGAGCCAGACTTCGAGAAAGTGGCAGATTTA    342
                     |..|...|||..|.||||||||.||.||.||.||.|||||.||.|||.|.
RBAM_004080__    284 CCAATACCGGCGGTTTAAAAGAACCGGATTTTGAAAAAGTCGCGGATATT    333

BSNT_00677___    343 GACCCTGACTTGATCATTATCTCAGGAAGACAATCTGAGTCTTACAAAGA    392
                     ||.||.||.||.|||||||||.|....|||||||||||.|||||.|||||
RBAM_004080__    334 GATCCGGATTTAATCATTATCGCCCACAGACAATCTGATTCTTATAAAGA    383

BSNT_00677___    393 ATTCTCTGAAATTGCGCCGACAATTTACCTTGGCGTAGAC---ACAGCGA    439
                     .|||||..||||.|||||.||.|||||.||||..|..|||   |||   |
RBAM_004080__    384 GTTCTCAAAAATCGCGCCCACGATTTATCTTGATGATGACTATACA---A    430

BSNT_00677___    440 AGTATATGGAATCATTTAAGTCTGACGCAGAAACAATCGGTAAGATCTTC    489
                     |.||..|.||...|||.|||....||.|.|||...|||||.||.|||||.
RBAM_004080__    431 ACTACGTTGACAGATTCAAGCACAACACCGAAGTGATCGGCAAAATCTTT    480

BSNT_00677___    490 GATAAAGAAGATGAAGTGAAGGATGAACTCGCAAAAATCGATCATTCAAT    539
                     .|.||||||.||||||||||.|||.|.||.||.|||||.||..|.||.||
RBAM_004080__    481 AACAAAGAAAATGAAGTGAAAGATAAGCTTGCGAAAATTGACAAATCCAT    530

BSNT_00677___    540 CGCAGATGTAAAGAAAACGGCTGAAAAGCTTAAC----AAAAACGGTCTC    585
                     .||.|||.|.|||||||    .||.||||...||    ||||||||..|.
RBAM_004080__    531 TGCGGATCTGAAGAAAA----AGACAAGCAGCACGGATAAAAACGGGTTA    576

BSNT_00677___    586 GTCATCATGGCGAACGACGGGAAGATCAGCGCATTCGGTCCTAAATCAAG    635
                     ||..|.||||||||||||||.||.||||||||.|||||..||||||||||
RBAM_004080__    577 GTGGTGATGGCGAACGACGGCAAAATCAGCGCGTTCGGATCTAAATCAAG    626

BSNT_00677___    636 ATACGGCCTGATCCATGACGTGTTCGGCGTGACACCGGCTGATAAAAACA    685
                     |||||||.|.||.|||||.|||||||||||.|.|||||||||.|||||||
RBAM_004080__    627 ATACGGCTTCATTCATGATGTGTTCGGCGTCAAACCGGCTGACAAAAACA    676

BSNT_00677___    686 TCAAAGCGTCTACT-CACGGACAAAGCGTTTCTTACGAGTACATTTCAAA    734
                     ||.||||.|| |.| ||||||||||||.||||.||.||.||.||..|.||
RBAM_004080__    677 TCGAAGCCTC-ATTGCACGGACAAAGCATTTCCTATGAATATATCGCCAA    725

BSNT_00677___    735 AACAAACCCGGATTACCTGTTTGTCATTGACCGCGGTACAGCGATCGGTG    784
                     |||||||||.||||||.||||||||.||||||||||.|||||||||||..
RBAM_004080__    726 AACAAACCCTGATTACATGTTTGTCGTTGACCGCGGAACAGCGATCGGCA    775

BSNT_00677___    785 AAACATCATCTACTAAACAAGTCGTTGAAAATGATTATGTGAAAAAT--G    832
                     .||.|||.||.||.||||||||.|||||||||||||||||  |||||  |
RBAM_004080__    776 CAAAATCTTCAACAAAACAAGTGGTTGAAAATGATTATGT--AAAATCGG    823

BSNT_00677___    833 TAAACGCAGTGAAAAATGATCATGTCGTCTACCTTGATTCTGCTACTTGG    882
                     |.||.||.||||||||..|.|||||.||||||||||||||.|||||.|||
RBAM_004080__    824 TGAAAGCCGTGAAAAACAACCATGTTGTCTACCTTGATTCAGCTACATGG    873

BSNT_00677___    883 TACTTATCAGGAGGCGGTCTTGAGTCTATGGCACAAATGATCAAAGAAGT    932
                     ||.||||||||||||||.||.||.||.|||||.||||||.|.||||||||
RBAM_004080__    874 TATTTATCAGGAGGCGGCCTGGAATCCATGGCGCAAATGGTGAAAGAAGT    923

BSNT_00677___    933 GAAAGACGGTTTAGAGAAGTAA    954
                     .||||||||..|.|||||||||
RBAM_004080__    924 AAAAGACGGAATCGAGAAGTAA    945


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_00677 and RBAM_004080

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
