Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_00672 and RBAM_004040

See DNA alignment / Visit BSNT_00672 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:25
# Commandline: needle
#    -asequence pep-align/BSNT_00672___yclM.1.9828.seq
#    -bsequence pep-align/RBAM_004040___yclM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00672___yclM-RBAM_004040___yclM.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00672___yclM-RBAM_004040___yclM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00672___yclM
# 2: RBAM_004040___yclM
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 454
# Identity:     370/454 (81.5%)
# Similarity:   414/454 (91.2%)
# Gaps:           0/454 ( 0.0%)
# Score: 1895.0
# 
#
#=======================================

BSNT_00672___      1 MKVVKFGGSSLASGAQLDKVFHIVTSDPARKAVVVSAPGKRYAEDTKVTD     50
                     |||||||||||||||||:|||.|||:|||||||||||||||:::||||||
RBAM_004040__      1 MKVVKFGGSSLASGAQLEKVFQIVTADPARKAVVVSAPGKRFSDDTKVTD     50

BSNT_00672___     51 LLIACAEQYLATGSAPELAEAVVERYALIANELQLGQSIIEKIRNDLFTL    100
                     |||.|||.||..|.||||||.|:||||.||.||.|..||||:||:|||.|
RBAM_004040__     51 LLIRCAEHYLQKGVAPELAETVIERYAAIARELNLDFSIIERIRSDLFAL    100

BSNT_00672___    101 LEGDKSNPEQYLDAVKASGEDNNAKLIAAYFRYKGVKAEYVNPKDAGLFV    150
                     |...|:|||||:||||||||||||||||||||.:|||||||:||:|||||
RBAM_004040__    101 LNSCKTNPEQYMDAVKASGEDNNAKLIAAYFRRQGVKAEYVSPKEAGLFV    150

BSNT_00672___    151 TNEPGNAQVLPESYQNLYRLRERDGLIIFPGFFGFSKDGDVITFSRSGSD    200
                     |:|||:||||||||.:|||||.|:||||||||||::|:.:::||||||||
RBAM_004040__    151 TDEPGSAQVLPESYGHLYRLRNREGLIIFPGFFGYTKEHEIVTFSRSGSD    200

BSNT_00672___    201 ITGSILANGLQADLYENFTDVDAVYSVNPSFVENPKEISELTYREMRELS    250
                     |||||||:||:|||||||||||||||||||.|.:||||:|||||||||||
RBAM_004040__    201 ITGSILASGLKADLYENFTDVDAVYSVNPSIVRHPKEINELTYREMRELS    250

BSNT_00672___    251 YAGFSVFHDEALIPAFRAGIPVQIKNTNNPSAEGTRVVSKRDNTNGPVVG    300
                     ||||||||||||||||||||||||||||||.|:||||||.||||||||:|
RBAM_004040__    251 YAGFSVFHDEALIPAFRAGIPVQIKNTNNPDAKGTRVVSSRDNTNGPVIG    300

BSNT_00672___    301 IASDTGFCSIYISKYLMNREIGFGRRALHILEEHGLTYEHVPSGIDDMTI    350
                     |||||||||||||||||||||||||:|||||||.|||||||||||||:||
RBAM_004040__    301 IASDTGFCSIYISKYLMNREIGFGRKALHILEEEGLTYEHVPSGIDDITI    350

BSNT_00672___    351 ILWQGQMDAATERSVIKRIEEDLHADEVIVEHHLALIMVVGEAMRHNVGT    400
                     ||...|||:..|..::.|::::|.||||.|.|:|||||||||||||||||
RBAM_004040__    351 ILRHNQMDSELEHRLVTRLKQELQADEVTVRHNLALIMVVGEAMRHNVGT    400

BSNT_00672___    401 TARAAKALSEAQVNIEMINQGSSEVSMMFGVKEAEERKAVQALYREFFAG    450
                     ||||:||||||.|||||||||||||||||||||.:|:.||:|||.|||||
RBAM_004040__    401 TARASKALSEAGVNIEMINQGSSEVSMMFGVKEEQEKHAVRALYDEFFAG    450

BSNT_00672___    451 VLIS    454
                     ||:|
RBAM_004040__    451 VLLS    454


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