Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00672 and RBAM_004040
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:25
# Commandline: needle
# -asequence dna-align/BSNT_00672___yclM.1.9828.seq
# -bsequence dna-align/RBAM_004040___yclM.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00672___yclM-RBAM_004040___yclM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00672___yclM-RBAM_004040___yclM.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00672___yclM
# 2: RBAM_004040___yclM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1396
# Identity: 1044/1396 (74.8%)
# Similarity: 1044/1396 (74.8%)
# Gaps: 62/1396 ( 4.4%)
# Score: 3744.0
#
#
#=======================================
BSNT_00672___ 1 ATGAAGGTCGTTAAATTCGGAGGCAGCTCACTTGCTTCAGGCGCCCAGCT 50
|||||.||.||.|||||||||||||||||.|||||.|||||.||.|||||
RBAM_004040__ 1 ATGAAAGTTGTAAAATTCGGAGGCAGCTCTCTTGCGTCAGGAGCACAGCT 50
BSNT_00672___ 51 TGACAAGGTGTTTCACATCGTTACCTCAGATCCGGCACGGAAAGCTGTAG 100
|||.||.||||||||.|||||.||..|.|||||.||.||||||||.||.|
RBAM_004040__ 51 TGAGAAAGTGTTTCAAATCGTGACGGCTGATCCCGCGCGGAAAGCCGTCG 100
BSNT_00672___ 101 TCGTTTCAGCTCCGGGAAAACGCTATGCCGAGGATACGAAAGTGACTGAT 150
||||.||.||.|||||||||||||...|.||.|||||.||.|||||.|||
RBAM_004040__ 101 TCGTATCGGCACCGGGAAAACGCTTCTCGGACGATACAAAGGTGACGGAT 150
BSNT_00672___ 151 CTCTTAAT-CGCATGTGCAGAACAATATTTGGCAACAGGCAGT-GCACCT 198
||.||||| ||| |||||.||.||.||||| ||||.|.|..|| ||.||.
RBAM_004040__ 151 CTGTTAATCCGC-TGTGCGGAGCATTATTT-GCAAAAAGGTGTAGCGCCC 198
BSNT_00672___ 199 GAACTGGCGGAAGCAGTTGTGGAACGGTACGCTCTCATCGCCAATGAGCT 248
||.||.||.|||.|.||..|.|||||||||||...||||||...||||||
RBAM_004040__ 199 GAGCTTGCCGAAACGGTCATTGAACGGTACGCCGCCATCGCGCGTGAGCT 248
BSNT_00672___ 249 TCAGCTGGGGCAAAGC---ATTATCGAAAAAATCAGAAATGATCTGTTTA 295
..|.|||| |...| |||||.||||.||||.|.|.|||.||.||..
RBAM_004040__ 249 GAACCTGG---ATTTCTCTATTATAGAAAGAATCCGCAGTGACCTATTCG 295
BSNT_00672___ 296 CGCTTTTAGA-AGGAGATAAAAGCAATCCCGAGCAATACCTTGACGCAGT 344
|.||||||.| ||..| |||||.|||||||||.|||||..|.||.||.||
RBAM_004040__ 296 CTCTTTTAAACAGCTG-TAAAACCAATCCCGAACAATATATGGATGCGGT 344
BSNT_00672___ 345 CAAGGCCAGCGGAGAGGATAACAATGCCAAGCTGATCGCCGCTTACTTCC 394
.|||||.|||||.|||||.|||||.||.|||||||||||.||.|||||||
RBAM_004040__ 345 GAAGGCGAGCGGCGAGGACAACAACGCGAAGCTGATCGCAGCCTACTTCC 394
BSNT_00672___ 395 GTTATA----AAGGCGTCAAAGCGGAATATGTAAACCCGAAGGATGCCGG 440
| | |.|||||.|||||||||||.||||..|||||.||.||.||
RBAM_004040__ 395 G----ACGGCAGGGCGTGAAAGCGGAATACGTAAGTCCGAAAGAAGCGGG 440
BSNT_00672___ 441 CCTCTTTGTGACAAATGAACCCGGCAACGCGCAAGTTCTTCCTGAATCCT 490
.||.||||||||..||||||||||.|.||||||.||.||.|||||.||.|
RBAM_004040__ 441 GCTGTTTGTGACGGATGAACCCGGAAGCGCGCAGGTGCTCCCTGAGTCTT 490
BSNT_00672___ 491 ATCAAAACCTCTATCGTCTTCGGGAA--CGTGACGGACTCATCATTTTTC 538
||....|..|.||.||||| |.||| |||||.|||.|.||||||||||
RBAM_004040__ 491 ATGGTCATTTGTACCGTCT--GAGAAACCGTGAAGGATTGATCATTTTTC 538
BSNT_00672___ 539 CCGGTTTTTTCGGATTCAGCAAGGATGGCGATGTGA---TCACATTCTCA 585
|.||.||||||||.|.||..||||| || |||.|| |.||.||.||.
RBAM_004040__ 539 CGGGATTTTTCGGTTACACGAAGGA--GC-ATGAGATTGTGACGTTTTCC 585
BSNT_00672___ 586 CGGAGCGGTTCTGATATTACCGGTTCGATTCTTGCCAACGGACTACAAGC 635
|||||||||||||||||||||||.||.|||||.||||.|||..||.||||
RBAM_004040__ 586 CGGAGCGGTTCTGATATTACCGGCTCCATTCTCGCCAGCGGCTTAAAAGC 635
BSNT_00672___ 636 CGATTTGTACGAAAACTTTACAGACGTGGACGCTGTGTATTCTGTCAATC 685
|||..||||||||||||||||.||.|||||.||.||.|||||.|||||.|
RBAM_004040__ 636 CGACCTGTACGAAAACTTTACTGATGTGGATGCCGTCTATTCCGTCAACC 685
BSNT_00672___ 686 CGTCCTTCGTTGAGAATCCAAAGGAAATCAGCGAGCTGACATATAGAGAG 735
||||..||||...|.||||.||.|||||.|.|||.|||||.|||.|.||.
RBAM_004040__ 686 CGTCAATCGTGCGGCATCCGAAAGAAATTAACGAACTGACGTATCGGGAA 735
BSNT_00672___ 736 ATGCGGGAGCTGTCCTACGCGGGTTTTTCAGTGTTTCATGATGAAGCGCT 785
|||||.|||||.|||||.||.||.|||||.||.|||||||||||||||||
RBAM_004040__ 736 ATGCGTGAGCTCTCCTATGCCGGATTTTCCGTTTTTCATGATGAAGCGCT 785
BSNT_00672___ 786 CATTCCGGCATTCAGAGCGGGGATTCCTGTTCAGATCAAAAATACGAACA 835
.|||||.|||||..|.||.||.||.||.|||||.||.||.||||||||.|
RBAM_004040__ 786 GATTCCCGCATTTCGGGCCGGCATCCCCGTTCAAATTAAGAATACGAATA 835
BSNT_00672___ 836 ACCCCTCAGCCGAAGGCACCCGCGTCGTCAGCAAGCGGGATAACACAAAC 885
|.||....||..||||.||.|||||||||||||..||.||.||.||.|||
RBAM_004040__ 836 ATCCGGATGCGAAAGGAACACGCGTCGTCAGCAGCCGTGACAATACGAAC 885
BSNT_00672___ 886 GGGCCTGTCGTCGGCATTGCCAGCGACACCGGTTTTTGCAGCATTTATAT 935
|||||.|||.|||||||.||.||||||||.||.||||||||||||||.||
RBAM_004040__ 886 GGGCCAGTCATCGGCATCGCAAGCGACACGGGCTTTTGCAGCATTTACAT 935
BSNT_00672___ 936 CAGCAAGTATCTCATGAACAGAGAAATCGGTTTTGGCCGCAGAGCCCTTC 985
.|||||.|||.|.||||||.|.|||||||||||.|||||||.||||||||
RBAM_004040__ 936 AAGCAAATATTTAATGAACCGGGAAATCGGTTTCGGCCGCAAAGCCCTTC 985
BSNT_00672___ 986 ACATCCTGGAGGAGCATGGTTTGACGTATGAGCATGTTCCATCGGGAATC 1035
||||..|||||||..|.||.|||||||||||.||.||||||||.||.||.
RBAM_004040__ 986 ACATTTTGGAGGAAGAAGGATTGACGTATGAACACGTTCCATCCGGCATT 1035
BSNT_00672___ 1036 GATGACATGACAATCATTTTATGGCAGGGGCAA----ATGGATGCCGCCA 1081
||.|||||.||.|||||..|..|||| ||| |||||..|.| .|
RBAM_004040__ 1036 GACGACATCACGATCATCCTTCGGCA----CAATCAGATGGACTCAG-AA 1080
BSNT_00672___ 1082 CT-GAACGCAGCGTCATCAAACGGATC-GAAG-AGGATTTGCATGCCGAT 1128
|| ||||.|||..||.|||..|| || |||| ||||..|.||.||.|||
RBAM_004040__ 1081 CTGGAACACAGGCTCGTCACCCG--TCTGAAGCAGGAACTTCAAGCAGAT 1128
BSNT_00672___ 1129 GAAGTCATCGTCGAGCATCATCTCGCCCTGATTATGGTTGTAGGGGAAGC 1178
|||||||..|||..|||..||||.||.|||||||||||.||.||||||||
RBAM_004040__ 1129 GAAGTCACAGTCAGGCACAATCTGGCGCTGATTATGGTCGTCGGGGAAGC 1178
BSNT_00672___ 1179 GATGCGCCACAATGTCGGTACAACGGCAAGAGCCGCCAAAGCATTATCAG 1228
|||||||||.||||||||.|||||.||.||.||..||||||||.|.||.|
RBAM_004040__ 1179 GATGCGCCATAATGTCGGCACAACCGCCAGGGCATCCAAAGCACTGTCGG 1228
BSNT_00672___ 1229 AGGCACAG-GTGAATATCGAAATGATCAATCAGGGATCTTCTGAAGTGAG 1277
|.|| |.| ||.||.|||||.|||||||||||.||.||.||.|||||.||
RBAM_004040__ 1229 AAGC-CGGCGTCAACATCGAGATGATCAATCAAGGGTCATCGGAAGTCAG 1277
BSNT_00672___ 1278 CATGATGTTTGGCGTAAAAGAAGCCGAAGAAAGAAAAGCCGTCCAAGCG- 1326
|||||||||.||.||.|||||||...|.||||.|.|.||.|| |||
RBAM_004040__ 1278 CATGATGTTCGGAGTGAAAGAAGAACAGGAAAAACACGCGGT----GCGG 1323
BSNT_00672___ 1327 -----TTAT-ACCGGGAATTTTTCGCGGGCGTGCTGA-TCTCTTAA 1365
.||| || |||||||||||.||.|| ||.| ||||.||.
RBAM_004040__ 1324 GCACTGTATGAC---GAATTTTTCGCCGGAGT-CTTACTCTCATAG 1365
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