Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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Amino acid alignment: BSNT_06058 and RBAM_003940

See DNA alignment / Visit BSNT_06058 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:32
# Commandline: needle
#    -asequence pep-align/BSNT_06058___yxeO.1.9828.seq
#    -bsequence pep-align/RBAM_003940___yxeO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_06058___yxeO-RBAM_003940___yxeO.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_06058___yxeO-RBAM_003940___yxeO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_06058___yxeO
# 2: RBAM_003940___yxeO
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 249
# Identity:     213/249 (85.5%)
# Similarity:   236/249 (94.8%)
# Gaps:           0/249 ( 0.0%)
# Score: 1094.0
# 
#
#=======================================

BSNT_06058___      1 MITVKNIRKAFKDLVVLDGIDLEVKRGEVVAIIGPSGSGKSTLLRCLNLL     50
                     ||.|::||||||||.||||||||:|.|||.||||||||||||||||||||
RBAM_003940__      1 MIQVRHIRKAFKDLTVLDGIDLEIKSGEVTAIIGPSGSGKSTLLRCLNLL     50

BSNT_06058___     51 ERPDQGLIEIGEAKLNAEKFTRKEAYRLRQQTAMVFQNYNLFKNKTALQN    100
                     ||||.|:||||:|||||..::||:.::|||||||||||||||||||||||
RBAM_003940__     51 ERPDDGIIEIGDAKLNAASYSRKDVHKLRQQTAMVFQNYNLFKNKTALQN    100

BSNT_06058___    101 ITEALIVAQHKPRDEAKRIGMEILKQVGLEHKADSYPITMSGGQQQRIGI    150
                     :|||||.||.|||.||::|||::|:|||||||||||||||||||||||||
RBAM_003940__    101 VTEALITAQKKPRKEAEQIGMDLLRQVGLEHKADSYPITMSGGQQQRIGI    150

BSNT_06058___    151 ARALAVNPHAILLDEPTSALDPELVTGVLQVIKSIAEKQTTMIIVTHEMA    200
                     ||||||:||||||||||||||||||.||||||||||||||||||||||||
RBAM_003940__    151 ARALAVDPHAILLDEPTSALDPELVAGVLQVIKSIAEKQTTMIIVTHEMA    200

BSNT_06058___    201 FAKEVADKVIFMADGHIIEQGTPKELFDHPKNERTKRFIKQVGEPAELI    249
                     ||:||||||||||||.|||||||:||||:|:|||||:|||||||||||:
RBAM_003940__    201 FAREVADKVIFMADGRIIEQGTPEELFDNPQNERTKKFIKQVGEPAELV    249


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