Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

Amino acid alignment: BSNT_00648 and RBAM_003820

See DNA alignment / Visit BSNT_00648 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:23
# Commandline: needle
#    -asequence pep-align/BSNT_00648.1.9828.seq
#    -bsequence pep-align/RBAM_003820___yclD1.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile pep-align/BSNT_00648-RBAM_003820___yclD1.aln
# Align_format: srspair
# Report_file: pep-align/BSNT_00648-RBAM_003820___yclD1.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00648
# 2: RBAM_003820___yclD1
# Matrix: EBLOSUM62
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 75
# Identity:      52/75 (69.3%)
# Similarity:    57/75 (76.0%)
# Gaps:          14/75 (18.7%)
# Score: 299.0
# 
#
#=======================================

BSNT_00648         1 --------------MSKSPVEGAWEVYQCQTCFFTWRSCEPESITNPKKY     36
                                   :|:|||:||||:|||||||||||||||||||||..:
RBAM_003820__      1 MKTCPRCESKKGETVSQSPVKGAWEIYQCQTCFFTWRSCEPESITNPAAF     50

BSNT_00648        37 NPAFKIDPKETETAIEVPAVPERKA     61
                     ||||||||||||||..|||||||||
RBAM_003820__     51 NPAFKIDPKETETAAHVPAVPERKA     75


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.